Limosilactobacillus fermentum F-6: LBFF_0037
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Entry
LBFF_0037 CDS
T02669
Name
(GenBank) ATP-dependent helicase/nuclease subunit A
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
lff
Limosilactobacillus fermentum F-6
Brite
KEGG Orthology (KO) [BR:
lff00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lff03400
]
LBFF_0037
Enzymes [BR:
lff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LBFF_0037
DNA repair and recombination proteins [BR:
lff03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LBFF_0037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
AGL87959
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All DBs
Position
45031..49044
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AA seq
1337 aa
AA seq
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MVFTPSKEQEPAINDRQKDILVSASAGSGKTAVLVERVIQLMETGLSKDAKPSERPNIDD
ILMVTFTTDAAKNMRDRIRRRLVGATDEHMKAQVARLALANISTIHSFCEQLIKRYYYVI
DLDPQFRLIDDAEQQLLKEQAWQVTLDDWVANPDQVGALHQLIDNFGAGNLESVVQALDT
EADAQPHPSDWLAGLSGLYQFEEGADPRQSAFFKRLLEPLVGPQLKELRDQWAALGEVGP
ARFAEQVEEDLAKLATTVDDQGHLLGSWDSLAQTLNKKNFAPKLRKRKDDDDPKLLDELG
VQRGGLRDQLGDLHDTYFFQSAADLVKYGQKAGALIEILTRVATDFRCHYQIIKQDRRLL
DFSDLEHYAYAILTGENINPKVTWSDEEARAKRQAAAQVQAELQRHYKEIMIDEYQDTNR
LQDDLLRLLHKSGQNHRFMVGDMKQSIYRFRQADPTLFKDYYDQFSTDGQSSEALDLSDN
YRSRHEVTDLVNLIFEQLMDQQLGEMVYDDKASLKPKADWGADRDQASPATPEILLFDGG
VKKTTANPTGEDAIVVRQPEDKVASEVWLIGQRIRELLAKETILDPETKRVRPITPGDIA
ILSRAKRIHSVIAEQFAKLNLPVMVHGVENYFKATEIRVVMSLLKVIDNPYQDVPLAAVL
RSPLIQVAPEVAAKFGLSQGENRIGFTEPELAYLKVNSTSKDFFGVVQQNYYAWRDQEVE
AVENHDALTEEELAERVAGDPAGLATKEELGVNCGLIYLKLARFFELRDHLRRVAQRRPL
VDLIWTIYQATGYLDYVGGMSGGPQRQANLHALYERASGYEESGFKGLYQFIHFIEQMQK
KNDDLGEATTALAGDAINVMTIHKSKGLQFPIVFLVETTHQFQADRDPVTIEPQAGLGFT
YVDSTANETMRVKHPLVQQAALKEKKKRQDRAEEMRLLYVALTRAEQRLFITGYVKDADL
TKKMDKWNRAFDSASPLLTTTTRLKGQSMLDWIMMTLVRTANFPTLREGVEAAATPLRGL
TKAAYQIKLQNADQVQAALNTPLDLHPNATAEQATPAAATSRQFKADLERVLNFTYPDQV
ATQTTAFQAVSTVREAFARQDPTNLEMGQLEIDRDQIKEAGAYLAPEERAFENPAFITGA
SDQEPTGTAIGTATHLVFQKLPLTEPLDEGAVRALIKSLTESGLIDNPQVAAGIDVAGVV
SFYQTGLGQVITAHPEQVHREVPFSMLLSAHDLFSGIGATDDSEVLIHGIIDGYVQHDDQ
IDLFDYKTDRISQAHPEEDLQELADKYSGQLVLYADALTKMTGVPLEKIHRHLYFTRAKR
VVTLSAPPSSHEPKEEA
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atggttttcacaccaagtaaggaacaggagccggcgatcaacgaccggcaaaaagacatt
ttggtttccgcctcggcggggagtgggaagaccgccgttttggttgagcgggtgatccag
ctgatggaaaccggactgagtaaggacgctaagcctagcgagcggcccaacatcgatgac
atcctgatggtgacctttaccaccgacgccgctaagaacatgcgcgaccggatccgccgg
cgcctggtcggggcgaccgacgaacacatgaaggcccaggtggcccgcttggccctggcc
aacatcagcacgatccactccttttgcgagcagttgattaagcgctactactacgtcatc
gacctcgacccccagtttcggttaattgacgacgccgaacagcagctcctaaaggaacag
gcctggcaagtgaccctcgatgactgggtggccaatccggaccaagtgggggcgctgcac
cagttaatcgataactttggggcggggaacctcgagtccgtcgttcaggcgctggacacc
gaggccgacgcccagccgcacccgagcgactggctggccggcttaagtggcctttaccag
ttcgaagaaggggcggacccgcggcaaagcgccttctttaagcgcctcttggaacccctc
gtgggcccgcaactaaaggaactgcgggaccagtgggcggcccttggcgaagtggggccg
gcccgttttgccgagcaggttgaagaagatttagctaaattagccacgaccgttgatgac
cagggccatttgttaggcagctgggacagcctggcccagaccctcaacaagaagaatttt
gcgcctaagttgcgcaaacgtaaggatgacgacgatcccaaactcttagacgaactgggg
gttcagcggggtggcctgcgggatcagctgggcgacctccacgatacctacttcttccag
tccgccgcggacctggttaagtatggtcaaaaggctggcgccctaattgagatcttaacc
cgggtggccaccgacttccggtgccactaccagatcatcaagcaggaccgccgcctgctc
gatttctccgacttagagcactacgcctacgccatcttgaccggcgaaaacatcaaccca
aaggtgacctggagtgacgaagaagcgcgggccaagcgccaagccgccgcccaagtccaa
gccgagttgcagcgccactacaaggaaatcatgatcgacgagtaccaagacaccaaccgc
ctgcaagacgacctgttacgcctcttgcacaagagtgggcaaaaccaccgctttatggtt
ggggacatgaagcagtcgatctaccgcttccgccaggccgaccccaccctgtttaaggac
tactacgatcagttcagcacggatgggcaaagcagtgaggccctggacctgagcgacaat
taccgctcccgccacgaggttaccgacctggtcaacctcattttcgaacagctgatggac
cagcaactgggtgagatggtctacgatgataaggccagcttgaagcccaaggccgattgg
ggggccgaccgggaccaggctagcccggcgaccccggaaatcctgctctttgatgggggc
gtcaagaaaacgaccgctaaccccaccggcgaggacgccatcgtggtccgtcagccggaa
gacaaggtcgctagcgaagtctggctgattggccaacggatccgcgagctcctggccaag
gaaacgatcttggacccggaaaccaagcgggtccgcccgatcacgccgggcgacatcgcc
attttgtcgcgggccaagcggattcactcggtgatcgccgaacagtttgccaagcttaac
ttaccggtgatggtgcacggggtggaaaactactttaaggccaccgagatccgggtcgtg
atgtccttgctaaaggtgatcgataacccctaccaagacgttccgttggcggccgtgctc
cgttcgccgctgattcaagtcgctcccgaggtggcggctaagttcggcctgagccagggc
gaaaaccggatcggctttacggaaccggagttagcctacttgaaggtcaacagcacctcc
aaggacttctttggcgtcgtgcagcaaaactactacgcttggcgcgatcaagaggtcgaa
gcggttgaaaaccacgacgccctgactgaagaggagctcgccgaacgggtcgcaggcgac
ccggccggcttagcgactaaggaagaactgggcgtcaactgtgggttaatctacctgaag
ttagcccgcttctttgagttgcgggaccacttacgccgggtcgcccagcgacgccccctg
gtggacttgatctggacgatttaccaagcaaccggctacctggattacgtgggcggaatg
agcggcggcccccagcgccaagctaacctccacgccctgtacgaacgggcgagtggctac
gaggagagtggcttcaagggactttaccagttcatccacttcatcgagcagatgcaaaag
aaaaacgacgacttgggcgaggcgaccacggccctggccggtgacgcgattaacgtcatg
acgatccacaagtccaaggggctccagttcccgatcgtcttcttagtggaaacgacccac
cagttccaagccgaccgggatccggtaacgattgagccccaggccgggcttggcttcacc
tacgtggatagcacggccaacgagacgatgcgcgtcaagcacccgctggtccaacaggcg
gccttaaaggagaaaaagaagcgccaggaccgggccgaagaaatgcgcctcctctacgtg
gccctgacccgggccgagcagcgcctcttcatcaccgggtacgtgaaggacgctgacctg
accaagaagatggataagtggaaccgggcctttgatagcgccagcccgctgttgaccacc
accacacgcttgaagggacaatcgatgcttgattggatcatgatgaccctggtgcggacg
gcaaacttcccaacgctaagggagggggttgaagccgccgccaccccgctgcggggcctt
accaaggcggcctaccaaattaagctgcaaaacgctgaccaggttcaggcggccctcaac
actccgctggacctgcacccgaatgcgacggcggagcaagccaccccggcggccgccact
agccgccagtttaaggccgacttagaacgggtgttaaactttacctacccggatcaagtg
gcgacccaaacgaccgcctttcaagccgtttcgacggtgcgggaggcctttgcccgccag
gaccctaccaacctggagatgggtcagctagaaattgaccgcgaccagatcaaagaagcc
ggggcctacctagcaccggaagagcgggccttcgaaaatcccgccttcatcaccggggcg
agcgatcaggagccaaccgggacggcgatcgggaccgctacccacttggtcttccagaaa
ttaccgttaacggaaccgcttgacgaaggggcggtccgtgctttaattaagtccctaacg
gagagtggtttaatcgataatccccaagttgcggcgggcattgacgtggccggcgtggta
tccttttaccaaacggggctcggtcaggtcattaccgcccaccctgagcaggttcaccgg
gaagtaccgttctcgatgttactgagcgcccacgatctcttcagcgggattggggccacc
gatgacagtgaggtattgatccacgggatcatcgacggctacgtccaacacgacgaccag
atcgacctgttcgattacaagaccgaccggatcagtcaggcccacccggaagaagacctc
caggaactggcggacaagtactcgggccaactggtgctgtacgccgatgccctgaccaag
atgacgggggttcccctagaaaagatccaccgccacctttacttcacccgggccaagcgg
gtggtaaccctgagcgccccgccgtcgtcgcacgaaccaaaggaggaagcataa
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