Limosilactobacillus fermentum F-6: LBFF_0194
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Entry
LBFF_0194 CDS
T02669
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lff
Limosilactobacillus fermentum F-6
Pathway
lff03420
Nucleotide excision repair
lff03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lff00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LBFF_0194
03430 Mismatch repair
LBFF_0194
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lff03400
]
LBFF_0194
Enzymes [BR:
lff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LBFF_0194
DNA repair and recombination proteins [BR:
lff03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LBFF_0194
MMR (mismatch excision repair)
Other MMR factors
LBFF_0194
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C_2
AAA_19
UvrD-helicase
UvrD_C
AAA_30
Viral_helicase1
NACHT
DEAD
AAA_16
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AGL88112
UniProt:
A0A806IHF3
LinkDB
All DBs
Position
complement(218181..220499)
Genome browser
AA seq
772 aa
AA seq
DB search
MTELTEQQREQARVDTVIKEIDRQIERAKQALAAAHQETRAVEQNYSENASINRYEIDDI
AESRSEIEQQRQLVARASENETILAHQLDTLKQLRAQPYFGRIDIQDPGQAEAESLYIGT
ASLMNEDRTDFLIYDWRAPIAGVYYNGTLGPVTYQTPAGTQRTTLVKKRQFTIHDGQIEN
MFDTNETVGDAMLQAALGRQNDQAMQNIVATIQKEQNDIIRNTTADLMVVQGVAGSGKTS
AILQRIAYLLYHARESLNADQIVLFSPNLLFSHYIASVLPSLGERNMRQVTLPNFLARRF
EGLQVESLFDRYETRQQSNAPHPVADWLEGAASMAAVKDYVDQLANSQAPLQFADLTFEG
RTLFTKEAIASIYHHQVAKMTVADRLVKVKNALLRRLQHLATTEAKRDWVAKELDTLSNQ
ELHALYGQKTIDDFEDEQAQAAYLARRWAKKRLRVVADAIYNNYFLDFHALYRQFLLHLP
LTGPITEAVQQQLATDFSHGVEFHRIKLVHTAPFLYLRDLLTGGGQNRSFQYVFIDEMQD
YSLATLIYLKHAFPDAKFTVIGDAEQALFKPLELPETLLNRVGDALAAKHPRLIALRRSY
RSTFEITTFAKSLLPDGDEITAFARHGDPAKLQVHYGQAAWQTGLIKAVQAMQQRFPTVA
VLTRDQEEASQVYHHLYGQVTDLHRLSKEDSQLPSGVLILPIYLAKGLEFDGVVIANVSA
AHLGDQATGLLYTMATRAMHALTMLTLGPVTPALTGAASQYLTIDHPTEPQR
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
gtgactgaactaacggaacaacaacgagaacaagcgcgggtggatacggtaatcaaggaa
atcgaccgccaaattgaaagggccaaacaagcgctagcggccgcccaccaagaaacccgg
gcggtggagcaaaactacagcgaaaacgcctcaattaaccgctacgaaatcgacgacatt
gccgaatcacggtccgaaatcgaacaacagcgccaactggtggcccgggccagcgaaaac
gaaaccatcctggctcaccaactggacaccctaaaacagttgcgggcccaaccctacttt
ggccgcatcgatattcaagacccggggcaagcagaagccgagtccctgtacattggcacg
gcctctttaatgaatgaggaccggaccgactttttgatttacgattggcgcgccccgatt
gctggggtgtattacaacggcaccctgggcccggtaacttaccaaaccccggccggcacc
caacggacgaccctggttaaaaagcgccagttcaccatccatgacggccagattgaaaac
atgtttgacaccaatgaaacggtcggcgacgccatgctgcaagcggccctggggcggcaa
aacgatcaggcgatgcaaaacatcgtcgccacgatccaaaaggaacaaaacgacatcatt
cgaaacaccaccgccgatttgatggtggtccaaggggtggccggctccgggaagacctcg
gcgatcctccagcggattgcttacctgctctaccacgcccgtgaatcgctgaacgccgac
caaatcgtcctcttctcacccaacctcttgttctcccactacatcgcttcggtcctgccc
tcgcttggtgaacgtaacatgcgccaggtaaccctgcctaacttcttagcccgccgcttt
gaagggctacaagttgaatcactctttgaccgctacgaaacccgccagcaatccaatgcc
ccccacccggtagcggattggttggagggcgccgctagcatggccgccgtcaaggactac
gtcgaccaactggccaacagccaagcccccctccagttcgccgacctgacctttgaaggg
cgcaccctgtttaccaaagaagcgatcgccagcatctatcaccaccaggtcgctaaaatg
acggtggccgaccggctagttaaggtcaaaaacgccctgctccgccgccttcagcaccta
gctaccaccgaagccaagcgcgactgggtggccaaagagctcgacaccctgtccaaccaa
gagcttcacgccctctacggccaaaagacgatcgatgactttgaggatgaacaggcccaa
gccgcctacctagcccgccgctgggcgaaaaaacggctccgggtggtcgccgacgccatt
tacaacaactactttttggactttcacgccctctaccgccagttcctgcttcacttgccc
ctgaccggccccatcacggaagcagtgcaacagcaactggccaccgactttagtcacggc
gttgaatttcaccggatcaagctagtccacaccgctcccttcttatacctgcgcgacctt
ttgaccggtggggggcaaaaccgcagtttccaatacgtcttcattgacgagatgcaagac
tactcgctggcgaccttgatctacctcaagcacgcctttccggacgctaagtttaccgta
attggcgacgccgagcaggccctcttcaaaccgctcgagttaccagaaaccctcttgaac
cgggttggcgacgccctagcggctaagcacccccgcttaattgccctacgccgctcttac
cggtccacctttgaaatcaccaccttcgccaaatccctgttgcccgacggcgatgaaatc
accgccttcgcccgccacggggacccggccaagcttcaggttcattacgggcaagcggcc
tggcaaaccggcttaatcaaggcggtccaagccatgcagcaacgatttcccaccgtcgcc
gttttgaccagggatcaagaagaggccagccaggtttaccaccacctctacggccaagta
actgacctgcaccgcctgagcaaagaagacagccagctccccagtggggtcttgatcttg
ccaatttacctggctaaggggctcgaattcgacggcgtggtgatcgctaacgtctcggcc
gcccacctcggcgaccaagctaccgggctcttgtacacgatggcgacccgagcgatgcac
gccttgacgatgctaacgctagggccggtcacgcccgctttaaccggggcggccagccag
tacttaaccattgaccaccccacggaaccacaaagataa
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