Limosilactobacillus fermentum F-6: LBFF_0230
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Entry
LBFF_0230 CDS
T02669
Name
(GenBank) DEAD box ATP-dependent RNA helicase SrmB
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lff
Limosilactobacillus fermentum F-6
Pathway
lff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBFF_0230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lff03019
]
LBFF_0230
03009 Ribosome biogenesis [BR:
lff03009
]
LBFF_0230
Enzymes [BR:
lff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LBFF_0230
Messenger RNA biogenesis [BR:
lff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LBFF_0230
Ribosome biogenesis [BR:
lff03009
]
Prokaryotic type
rRNA helicases
LBFF_0230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
DUF1087
HTH_22
Motif
Other DBs
NCBI-ProteinID:
AGL88144
LinkDB
All DBs
Position
254325..255803
Genome browser
AA seq
492 aa
AA seq
DB search
MYFSELGLSNKLLKAIQRSGYEEATPIQEQTIPMVLAGKDVIGQAQTGTGKTAAFGLPTI
EHVDVENPAIQTLIISPTRELAIQTEEELFRLGKEKRVKVQVVYGGADIRRQIRSLEKNP
QILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEMLNMGFLEDIEDIIKQTPSERQTLLF
SATMPPEIKRIGVQFMHDPQTVKIKAKELTTDLVDQYYVRAKDYEKFDIMTRMIDVQDPD
LTIVFGRTKRRVDELSRGLIARGYNAAGIHGDLTQDRRSKIMRRFKEGHLDILVATDVAA
RGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGVSLTFVTPNEMNYLHEIEKLTRA
RMLPLKPPTEEEAFRGQVASAYNDIDSLVADPTTNRYSEDAAKLLEKYDAVELVAALLND
LTKDDASQVPVKITPERPLPSRKRNGSGGNYRRGGHGNSHRNFHRNGGDGHRRFNGDRKR
RFSNNRNRRRED
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
ttgtattttagtgaattaggtttatccaacaagttgctcaaggcgatccaacgctccggt
tacgaagaggccacgccgatccaagaacaaacgatcccgatggtcttagccggcaaggac
gtgatcggccaggcccaaactgggactgggaagacggcagcgtttggcctgccaaccatt
gagcacgttgacgtggaaaacccggcgattcaaaccctgatcatctccccgacccgggag
ttggccatccaaaccgaagaggaactcttccgcctcggtaaggaaaagcgcgtgaaggtc
caagtggtttacgggggtgccgatatccgccgccaaatccgttccttagagaagaatccc
caaatcctggtcgggacgccggggcggttgcgtgaccacttgcgccgcggaacggtcgac
ttatctggggtgcaaaccctagtcttagacgaagccgatgaaatgttgaacatgggcttt
ttagaagacatcgaagacatcatcaagcaaacgccaagcgaacgccaaaccctgctcttt
tcggccaccatgccgccggaaattaagcggattggggttcaatttatgcacgacccgcaa
accgttaagatcaaggctaaggaactgaccaccgacctggtggatcagtactacgttcgg
gccaaggattacgagaagtttgacatcatgacccggatgatcgacgtccaagacccggac
ctgacgatcgtctttggccggaccaagcgtcgggtcgatgaactatcccgcgggctgatt
gcccggggctacaacgccgccgggattcacggtgatttgacccaggaccggcgcagcaag
atcatgcgccgctttaaggagggccacttggacatcttagtggcaaccgacgtggcggcc
cggggcttagacatttccggggtgacccacgtttacaactacgacatcccgtctgacccg
gattcttacgttcaccggattggacggacgggccgggccgggcaccacggtgtctcttta
accttcgtgacgccaaacgaaatgaattacctgcacgaaatcgagaagttaacccgggcc
cggatgttaccgctgaagccaccgacggaagaagaagccttccgtggtcaagtggccagc
gcctacaacgacattgattccttggtggctgatccgacgaccaaccgttacagcgaagac
gccgctaagttgttggaaaagtacgacgccgttgaattggtggcggcccttttaaacgac
ctgactaaagacgacgccagtcaagtaccggtcaagatcacaccggaacgaccactacca
agtcgcaagcgcaacggtagcgggggaaactaccgtcgcggcgggcatggtaattcacac
cgtaacttccaccggaacgggggcgatggtcaccggcgtttcaatggtgaccgtaagcgg
cgcttttcaaacaaccggaaccggcgccgcgaggattaa
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