Limosilactobacillus fermentum F-6: LBFF_0278
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Entry
LBFF_0278 CDS
T02669
Name
(GenBank) DNA repair protein radA
KO
K04485
DNA repair protein RadA/Sms
Organism
lff
Limosilactobacillus fermentum F-6
Brite
KEGG Orthology (KO) [BR:
lff00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lff03400
]
LBFF_0278
DNA repair and recombination proteins [BR:
lff03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LBFF_0278
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_25
ATPase
Zn_ribbon_LapB
DnaB_C
ChlI
Lon_C
AAA_22
ABC_tran
GvpD_P-loop
AAA_16
AAA
SLFN-g3_helicase
AAA_14
AAA_5
nSTAND3
AAA_24
NTPase_1
Rad51
ATPase_2
MCM
NPHP3_N
DUF7125
DUF7129
NACHT
DZR
KTI12
zf-RING_10
HypA
Motif
Other DBs
NCBI-ProteinID:
AGL88191
LinkDB
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Position
312047..313420
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AA seq
457 aa
AA seq
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MAKAKTHFVCQNCGYNSPRYLGRCPNCGQWSTLVEEVEQASTPAAKNATATLTGIVARPQ
RIQEIDTKKTPRVKTRLNELNRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSGQLSVEHH
KVLYVSGEESASQIKLRAQRLDVSGEDFYIYPETNMEAIRATIDSIQPEFVIIDSVQTMQ
AADVTSAIGSVSQIRAVTAQLMQIAKGQNITVFVVGHVTKGGVLAGPKILEHMVDTVLYF
EGDLHHTYRILRSVKNRFGSTNELGIFEMNTCGLTEVANPSEIFLEERLKDATGSAVVVS
LEGTRPILVEIQALITPTVFGNAQRTATGLNRNRVSLIMAVLEKRANLLLQNQDAYLKAA
GGVKLDEPAIDLAIAVAIASSYRDKGTRPTDAFVGEVGLTGEIRRVSRIEQRVAEAAKLG
FKRILVPKNNLAGWNPPQDIEVVGVTTLGEALKIALG
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagccaaaacacactttgtctgccaaaactgcggttacaattcaccgcgctat
ttagggcggtgtcccaattgtggccagtggagtaccttagttgaagaagtcgagcaggca
agtaccccggcggctaaaaacgctacggcaaccttaaccgggattgtggcccggccccag
cgaatccaagaaattgacaccaaaaaaacgccccgggttaagacccgcttaaatgagtta
aaccgggtgctaggtggcggaattgtacccggctcgttagtcttaattggtggggatccc
gggatcgggaagtccaccctgctcttacaagtgtcggggcaactgagcgtggaacaccac
aaggttctttacgtttccggggaagaatcggcctcccaaattaaattgcgggcccaacgc
ttagacgtttccggcgaggacttttatatctacccggaaaccaacatggaagccatccgg
gcgacgattgattccattcagcccgagtttgtaatcattgactcggttcagacgatgcag
gcggccgacgtgacctcggcgattgggtcggtctcccaaatccgggcggtcaccgcccag
ttgatgcagattgccaaggggcaaaacatcacggtcttcgtggttggtcacgtcaccaag
ggtggggtcttagccgggcccaagatcttggaacacatggttgacacggtgctgtacttt
gaaggggacctccaccacacctaccggattttacggtcggtcaaaaaccggtttgggtcc
accaatgagttagggatcttcgaaatgaatacctgcggtttgaccgaggtcgcaaacccc
tcggaaatctttttggaagagcggcttaaggatgccaccgggtcggccgtagtcgtatcc
ctggagggaacccgaccgatcctggttgaaatccaggccttgatcacgccaaccgtcttt
ggaaacgcccaaagaacggcgacgggtttaaaccgcaaccgggtttccttgatcatggcg
gtcctagaaaaacgggcgaacctgctcttacaaaaccaggatgcctacttgaaggcggcc
gggggcgttaagttagacgagccggccatcgaccttgcgatcgcggtggcaattgcttct
tcttaccgggataaggggacccggccgaccgacgccttcgtcggtgaagttggcttaacc
ggggagatccgtcgggtgagccgaattgaacagcgggtggccgaagccgctaaactaggc
tttaagcggattttagtgcccaaaaacaatttagcgggttggaacccgccgcaagacatc
gaagtcgtgggggtaacgacccttggcgaagcacttaaaattgcccttggatag
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