Limosilactobacillus fermentum F-6: LBFF_0412
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Entry
LBFF_0412 CDS
T02669
Name
(GenBank) Uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
lff
Limosilactobacillus fermentum F-6
Pathway
lff03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lff00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LBFF_0412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lff03400
]
LBFF_0412
Enzymes [BR:
lff01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
LBFF_0412
DNA repair and recombination proteins [BR:
lff03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LBFF_0412
Prokaryotic type
LBFF_0412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
PTHB1_CtH
Motif
Other DBs
NCBI-ProteinID:
AGL88323
LinkDB
All DBs
Position
465984..466673
Genome browser
AA seq
229 aa
AA seq
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MKQLINNDWWPVLKPQFETANYQQLHNFLVDEYGHQQVYPEMHHIFEAFNWTPFSKVKVV
ILGQDPYHGPGQAHGCSFSVLPGVAVPPSLQNIYKELQADLGCPPVKHGYLRSWAEQGVL
LLNSVLTVRAGQAYSHQGHGWEQLTDAAIVALSKRPTPVVFILWGRAARDKKRLIDLKRN
FVVESAHPSPLSAYRGFFGSRPFSKTNQFLEMTGQAPINWQLPSTVDHL
NT seq
690 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacagttaatcaacaatgattggtggccggtgttaaaaccacagtttgaaacggcc
aactaccagcaattgcataatttcttggtggatgaatatggccaccagcaggtctacccc
gagatgcaccacatctttgaggcctttaattggacccccttttcgaaggtcaaagtggtt
attttggggcaggatccgtatcacggaccggggcaggcccacgggtgttccttttcggtt
ttaccgggagtggctgtgccaccgtccttgcaaaacatttataaggaactccaagccgat
ttggggtgcccgcccgtcaagcatggctacctcaggtcctgggccgagcagggtgtttta
ctgctaaactcggttctgacggtgcgggctggccaggcttactcccaccaagggcacggc
tgggaacagctaaccgacgcggcgatcgtcgccctgtctaaacggccgaccccggtggtc
ttcatcttatgggggcgggcggcccgggataagaagcgtttgattgacctaaagcgcaac
ttcgtggtggaatcggcgcacccgagtcccctgtcggcctaccggggcttctttggttcg
cggccgttttcaaagaccaatcagtttttggagatgaccggccaagccccaattaactgg
caactgccgtcgactgtcgaccacctgtag
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