Limosilactobacillus fermentum F-6: LBFF_0536
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Entry
LBFF_0536 CDS
T02669
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
lff
Limosilactobacillus fermentum F-6
Brite
KEGG Orthology (KO) [BR:
lff00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lff03019
]
LBFF_0536
03009 Ribosome biogenesis [BR:
lff03009
]
LBFF_0536
Enzymes [BR:
lff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LBFF_0536
Messenger RNA biogenesis [BR:
lff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LBFF_0536
Ribosome biogenesis [BR:
lff03009
]
Prokaryotic type
rRNA helicases
LBFF_0536
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Hydrolase
Motif
Other DBs
NCBI-ProteinID:
AGL88445
LinkDB
All DBs
Position
593354..594736
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AA seq
460 aa
AA seq
DB search
MIESFADLHLADFLTPALKDLHFERPTAVQARVIPLILNGKSVVGQSRTGSGKTHAFLLP
IFSQLAPNNQTVQAVITTPSRELAYQIYNAAKQLNRFATTPLTIHNYVGGTDKEHQVEQL
NRRQPQLVIGTPGRILDLINSQALDIHTASQFVIDEADMTLDMGFLETVDQIAARFPEKL
QMMVFSATIPQGLRPFLKKYLENPVIEEIPTETVINPNVENWLMSTKGRDKNDLVYRLLT
LGDPYLALVFANTRDRATELANYLQERGLKVALIHGGLEPRARKRTMRQIRDMDYQYIVA
TDLAARGIDLEGVSLVLNDDIPSDLEYFVHRVGRTGRANMAGTAITLYAPAEDVLIEKLE
ERGITFIPKDLKNGRIVTTYDRNRRKAHRRKKAALDPTVKGFVKKAKKKVKPGYKRRIKQ
RIKEDERQKVKQAQRHEMRKAKRARQKQHRAERARQQNGR
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgattgaatcttttgcggaccttcacttggccgactttttaacgccggctctaaaggac
cttcactttgaacgaccaaccgccgttcaagcccgggtgatcccgttgatcctcaacggt
aagagcgtggtgggccaatcgcgaaccgggagtgggaagacccatgcctttttgttgccg
atctttagccaactagcccccaacaaccagacggtccaagccgttatcaccaccccgtcg
cgggaattagcctaccaaatttataacgccgccaagcaactaaaccgctttgcgaccacc
ccgttgacgattcacaactacgtcggtgggaccgacaaggagcaccaagtcgaacaattg
aaccggcgccaaccccaactggtgattgggacgccggggcgaatcttagacctgattaac
tcccaggccttagatatccacacggctagccagttcgtgatcgacgaagccgatatgacc
ttggacatgggctttttagaaacggttgaccaaatcgccgcccgcttccccgaaaagctc
cagatgatggtcttttcggccacgattccccaagggctacggccatttttgaagaagtac
ttggaaaacccggtgattgaagaaattcccaccgaaacggtcatcaaccccaacgtggaa
aactggttgatgtcgaccaaggggcgcgacaaaaacgacctggtctaccgcctgttgacc
ctaggggacccgtacctggccctggtctttgccaacacccgtgaccgggcgacagaactg
gctaactacttgcaagaacggggcttaaaggtcgccctgattcacgggggactggaacca
cgggcccgcaagcggacgatgcgccaaatccgggacatggactaccaatacatcgtggcg
acggacttagccgcccgggggattgacctggagggggtttccttagtcttaaacgatgac
attccaagtgacctggaatacttcgttcaccgggtcggccggacgggtcgggcgaacatg
gccgggaccgccatcaccctgtacgcgcccgccgaagacgtcctgattgaaaagttagag
gaacggggcatcacctttattccaaaggacttgaaaaacggccggatcgtcacgacttac
gaccggaaccgccgcaaggcccaccgccgtaagaaggcggccttagacccgaccgttaag
ggctttgtcaagaaggccaagaaaaaggtcaagccgggctacaagcgccgcatcaagcag
cggattaaagaagacgagcgccaaaaggttaagcaggcccagcgccacgaaatgcgcaag
gcgaagcgggctcggcaaaaacaacaccgggcggagcgggctcgtcaacagaatgggcgt
tga
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