KEGG   Limosilactobacillus fermentum F-6: LBFF_0614
Entry
LBFF_0614         CDS       T02669                                 
Name
(GenBank) Exodeoxyribonuclease V alpha subunit
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
lff  Limosilactobacillus fermentum F-6
Pathway
lff03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lff00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    LBFF_0614
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lff03400]
    LBFF_0614
Enzymes [BR:lff01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     LBFF_0614
DNA repair and recombination proteins [BR:lff03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     LBFF_0614
SSDB
Motif
Pfam: AAA_30 AAA_19 SH3_13 UvrD_C_2 OB_YrrC HHH_RecD2 AAA_11 Viral_helicase1 UvrD-helicase nSTAND3 T2SSE AAA_16 PIF1 AAA_12 UvrD_C NPHP3_N SLFN-g3_helicase AAA_28 AAA RsgA_GTPase AAA_29 AAA_22 NTPase_1 AAA_18 TsaE ABC_tran Rad17 AAA_17
Other DBs
NCBI-ProteinID: AGL88520
LinkDB
Position
673795..676341
AA seq 848 aa
MAYRDYTQPVIHDEKVQETGPTHFSGRVRKVIFSNPPFAILAVTVLKADFEWDTEEITVK
GDVGQVNEGDEFEFEGQVVNNPRYGFEFDFSGFVHQLPHDAKELAAFLKKNNVAVSDEKK
VAKAIDDALGEKAMSTLIGDADAIEVVSGLSQKDIATLKTFFNRLVKDDEASKANRQLMM
LGFSAWMIRRLQEFYQRRLLKILEEDIYQVVADYEQLGISFRPVDEAARQYQDVAFDDPR
RIDGALLFAAQILIRENSGSYIAPQLLLNRASQLLNQGATVSQDTLAARLGILLTQKKLY
HVPERGIYPALFFHAENLIASQLHQMMAAAQPVSAKRQKLIEKIVDQVAKEQKITYDDQQ
KAAIKQALEAPVLLLTGGPGTGKTTILNGIVRAYRRLLKEDGQKLHAWSDGEPIQLVAPT
GRAAKQARQAITGEGVAASTIHHFLSIATDNDAARLIEKPAPLENAGQMLVVDEMSMTST
LLMGGLMAVIPTNIHLVLVGDFDQLPSVGPGQVFRDLLESNCLPQVRLERIYRQDADSSL
IPLAQRINKGDVDEDFIAPTPKTKYPKRIFVTTAARDVPARIGQLVDAYLGGHDLDIQDI
QILTPLRRHRDLINSYLQDHLNPASLNQATYRLRSRELRVGDKVMQTTNDSDAEVYNGDI
GIIKSIAGKDKHVVNGDRLAKKEKVHLKVTVDFAGHLVKYDDPTALANLELAYAMTIHKA
QGSQAPVVIVTLLSEFFPTNPQAGSIIQRNLLYTAVTRSSRALVMVGDAPAFVRCSKTPV
VDRPTSLKQRLKLVWQAAQQDPDSPADEKAQTPVQEEQPADHLTPAMVEDERVDPLIGMD
GLSPADFA
NT seq 2547 nt   +upstreamnt  +downstreamnt
atggcgtaccgggattatacccagccggtaattcatgacgaaaaggtccaagaaacggga
ccaacgcatttttcggggcgggtacgaaaagttatcttttctaacccgccctttgctatt
ttagcggtgacggtgttaaaggctgactttgagtgggacaccgaagaaatcaccgttaag
ggtgacgttggtcaagttaacgagggcgatgagtttgaatttgagggtcaggttgtcaac
aacccgcgctacggctttgagtttgatttttcgggctttgtccaccagctgcctcacgac
gccaaggagctggccgcctttttaaagaagaacaacgtggcggtcagtgatgagaaaaag
gtggccaaggccattgatgacgccttaggcgaaaaggccatgagcaccctgattggcgac
gccgacgcaatcgaagtggtgtccgggttgagtcaaaaagacatcgcgaccttaaagacc
tttttcaaccggttggtcaaagatgacgaggccagcaaggccaaccgccagttgatgatg
ctcggtttctcggcctggatgatccgccgcttgcaggaattctaccaacggcggttgctt
aaaatcctcgaagaagacatttaccaagtggtagccgattatgagcagttggggattagt
tttcgcccggtggatgaggcggcacgccagtatcaagacgtggccttcgatgatccccgc
cgcatcgatggggccctcctctttgccgcccaaattctgattcgggaaaattccggctcg
tacatcgccccgcaattactgttgaaccgggctagccaactccttaaccagggcgccacc
gtcagccaggataccctggcggcgcgtttgggaattttactgacccaaaagaagctttac
cacgtgcccgagcggggaatctacccggccctgttctttcacgccgaaaatttaattgcc
agtcagcttcaccagatgatggcggcggcccagccggtcagcgccaagcggcaaaagctg
attgaaaagatagttgatcaggtggccaaggaacaaaaaatcacttacgacgaccagcaa
aaggcggcgataaaacaggccttagaagcaccggtgctgctcttgaccgggggaccgggg
accgggaagacgacgattctaaacgggatcgtgcgggcataccggcgcctgttaaaagag
gacggccaaaagctccacgcttggagcgatggggaaccaattcagttagttgcccccacc
gggcgggcggctaagcaagcccgccaggcgatcacgggtgagggcgttgccgcgtcaacc
atccaccacttcttgagcattgcaaccgataatgatgccgcccgtttgattgaaaaaccg
gcgcccctagaaaatgccggtcagatgctggtggttgacgaaatgtcgatgacctccacc
ctcttgatgggggggctaatggcggtgatcccgaccaacatccacttagtgttagtcggt
gacttcgatcagctgccgtcggtgggaccggggcaggtgttccgggacttgctcgaatct
aattgcttaccgcaagtccgcttggaacggatttaccgccaggacgccgattcctctttg
atcccgttagcccagcggatcaacaagggggacgttgacgaggacttcattgcccccacc
ccaaagactaagtaccccaagcgaatctttgtgaccaccgccgctcgcgacgttccggcc
cggattggtcagctagtcgacgcctacttgggtggtcacgacttggatattcaagatatt
cagatcttaaccccgctacggcgccaccgcgacctgattaatagctacttgcaagaccac
ctgaatccggccagcttaaaccaggccacttaccggttacgaagccgggagctacgggtg
ggcgacaaggtaatgcagacaacgaacgactccgacgccgaggtttataacggtgacatc
gggatcatcaagtcgattgccgggaaagataagcacgtcgttaacggcgatcggctcgcc
aaaaaggagaaggtgcacctgaaggtcacggtcgactttgctggccacctggttaaatac
gatgaccccaccgccctggctaacttagaactggcctacgcgatgacgattcacaaggcc
caggggagtcaggcgccggtcgtgattgtgaccttgctgtcggagtttttcccgactaac
ccccaggctggttcaatcatccaacgtaacctcttgtacacggcagtgacccggtcgtcg
cgggctctggtgatggtgggtgacgccccggccttcgtgcgttgctctaagacgccggtg
gtggaccgccccacctcgctcaagcagcgactgaagttggtttggcaagcagcccagcag
gatccagactccccggcagacgagaaagcccagacgccggttcaagaagaacaaccagcg
gatcacttgacgccggcaatggtggaagacgaacgggtggacccgctgatcggcatggat
ggattaagtccggccgactttgcctaa

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