Limosilactobacillus fermentum F-6: LBFF_0648
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Entry
LBFF_0648 CDS
T02669
Name
(GenBank) Ribonuclease Z
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
lff
Limosilactobacillus fermentum F-6
Brite
KEGG Orthology (KO) [BR:
lff00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lff03016
]
LBFF_0648
Enzymes [BR:
lff01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
LBFF_0648
Transfer RNA biogenesis [BR:
lff03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
LBFF_0648
Prokaryotic type
LBFF_0648
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_2
Lactamase_B
Lactamase_B_4
Anti-Pycsar_Apyc1
PDEase_II
Motif
Other DBs
NCBI-ProteinID:
AGL88554
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All DBs
Position
708418..709350
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AA seq
310 aa
AA seq
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MQIEFLGTGAGSPSKQRNVSSLALRLLEERNAIWLFDCGEATQHQILHTTIRPRKVEKIF
ITHLHGDHIFGLPGFLSSRSFQGGDEPLTIYGPKGIKDFVQTALKVSESRLSYPLKFVEL
TSDGEVFKDQTFTVTARRLDHKIASFGYRVEEEAHPGELMVEKVRQAGIPSGPLYGQLKR
GEVVTLPDGRTVDGHDFIGAPQPGRIVAILGDTRVTDNAVKLAKGADVLVHEATFAKNEQ
RLAHNYYHSTSAQAATVAKKAGAQRLLLNHISARYVGRYANELAYQVRDIFEQTRVVNDL
DVIEIPFKER
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
atgcagattgaatttttaggaactggggcggggtcgccaagtaagcaacggaacgtttca
agcctggccctgcgcctgttagaggaacgcaacgccatttggctctttgactgcggggag
gcgacccaacaccagatcctgcacaccaccattcgcccccgcaaggtggaaaagattttc
atcacccacctgcacggcgatcacatctttggtttgcccggcttcttgtcgtcgcgctcc
tttcagggcggcgacgaaccgctaaccatttacggacccaaggggattaaagactttgtg
caaaccgccctcaaggtgtcggaatcgcgcctgtcttacccgctcaagttcgtggagctg
actagcgatggcgaggtctttaaggaccaaaccttcaccgtgaccgcccggcggctggac
cacaagattgccagctttggctaccgggtggaagaggaggcccaccctggtgaactgatg
gttgaaaaggtacgccaagctgggattccgtcggggccactgtacggccaactcaagcgc
ggtgaggtggtgaccctgccagacggccgcacggtcgatggccacgacttcatcggggcg
ccgcaaccgggccggatcgtcgctattttaggcgatacccgggtgaccgataacgccgtt
aagttagctaagggcgccgacgtcctagttcacgaggcgacctttgccaaaaacgagcaa
cgcttagcccacaactactaccactcaaccagcgcccaggcggccacggttgccaaaaag
gcgggtgcccagcgcttattgctcaaccacatttcggcgcgttacgtcggcaggtacgcc
aatgagctggcctaccaagtgcgggacatttttgagcaaacccgggtggtgaatgattta
gacgtcatcgagattccttttaaggaaaggtaa
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