Limosilactobacillus fermentum F-6: LBFF_0916
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Entry
LBFF_0916 CDS
T02669
Name
(GenBank) DNA-directed DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lff
Limosilactobacillus fermentum F-6
Pathway
lff03030
DNA replication
lff03430
Mismatch repair
lff03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lff00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LBFF_0916
03430 Mismatch repair
LBFF_0916
03440 Homologous recombination
LBFF_0916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lff03032
]
LBFF_0916
03400 DNA repair and recombination proteins [BR:
lff03400
]
LBFF_0916
Enzymes [BR:
lff01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LBFF_0916
DNA replication proteins [BR:
lff03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LBFF_0916
DNA repair and recombination proteins [BR:
lff03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LBFF_0916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AGL88810
LinkDB
All DBs
Position
961588..964887
Genome browser
AA seq
1099 aa
AA seq
DB search
MGFVPLAVKSMYSLLEAPVRPAELVAVAKERGYQAVGLVDTRVLYGAVNFVRRANQAGLH
PVIGVSLPLTFAEGTLDVTLLAKGAVGYQNLTRLSTRAMTDRANQPLTIENLREVSDDLV
VIVAPQLMLLGVSEQTYAQLGEVADYLGINLDFTAAERQDLQAVAERCGLPLIAFEPVEY
LNEDDYFATQVLRAIKAGHTIEDPLKASQRTGRHWLRPAEEVAAAYRAAGLAEAAAQTVA
VAERCQVHFADQTPVLPAFPTPAGQGVADYLRELCQRGLAKRKLAGDPAEYQARLEHELT
VIHQMGFDNYFLIVWDLMNFAHQHQILTGPGRGSAAGSLVAYALAITDVDPLQYGLLFER
FLNPERAQMPDIDLDLPDNRREEVLNYLHHHYGHERVAQIITFGSLGTKQVLRDVSRVFN
LPKYQVESLSQVIDRVKGPHQTLADLLESAQPVQNLARDSKLVACLLEVAAKLEGLPRHD
SIHAAGVVLAAEPLIKTVPLQAGNEPGAMLVTQFEKDTVESLGLLKIDLLGLRNLTTVET
ALNLIHQHQPDFDLTHIALNDRPTLALFDRGQTSGIFQFESSGIRQTLVNLHPDNFEEIV
AVNALYRPGPMDNINHFIARKKGQEAVNLPAKELAPILAPTYGILVYQEQVMQVAAVMGG
FSLGEADLLRRAMSKKKLATMASMKEAFLAGANKRGYPNAVAEQVFAYIDQFANYGFNRS
HAVAYSKMAFEMAYLKVHFPAEFLAALMETDPDTSKVWAYFSEAKQLGITTHGPAINQSQ
ERVSLVDQELWLGLDMIKGLRRDFIRAIIEERNQYGPYQDLPDLVNRLDAKWHKEALFVP
LIDAGALDHLGYNRAEMAEGLKAILEGAEYAGLGLGMAPVVAQRNEYPLAVRLAREHAVL
GTYLSGHPVSQYQDLRTKLKLPTVAQLRPNQRVRLVLMVTRMRKVTTKREHKPMAFLTAS
DETGAVEVTIFNRLFTQLEGELRVNGIYLITAKTEQREGQVQLLADQVTDAQVVNRELHP
ADHRWVLRLPSGVAQTTVTDGIKALAKEHAGNVPVVIYDPVTQKATQLPGQLWLAKQRVV
QEGLINLVGRSNLAFQALS
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgggctttgtacccttagccgttaagagtatgtactccctactagaggcgccggttcgc
cccgcggagctggtggcggtagctaaagagcggggctaccaggcggtcggccttgttgat
acgcgggtcttgtacggggcggtcaacttcgttcgccgggccaaccaagccgggctacac
ccggtgatcggcgtcagcctaccgctcacctttgcggagggaaccttagacgtcaccctg
ctggccaagggggcggtgggctaccaaaacctaacccgcctctcgaccagggcgatgacc
gaccgggccaaccaaccactaaccatcgaaaatttacgggaggtttcagacgacctggtc
gtgatcgtggccccgcagttgatgttattgggcgttagtgagcaaacgtacgcccagctc
ggagaagtggccgactacctggggattaacctcgatttcacggcggccgagcgccaggac
ttacaagccgtcgccgagcgctgtgggctgcccctaattgccttcgagccggtcgagtac
ctcaacgaggatgattactttgccacccaggtcttacgggcaatcaaggccggccacacg
attgaagaccccctcaaggccagtcagcgaacgggtcggcactggttgcggccggctgaa
gaggtggcggcggcctaccgggcggcggggcttgcggaagcggcggcccaaacggtggcg
gtggccgaacggtgccaggtccactttgccgatcaaacgccggtcctacccgcttttccg
actccggccggccagggcgtggctgactacctacgcgaactgtgtcaacgggggttggct
aagcgaaagttggccggtgatcccgccgagtaccaggcccgcttggagcatgaattaacc
gtcattcaccagatgggctttgacaactattttttgattgtctgggacttgatgaacttt
gcgcaccaacaccagatcctgaccggacccggccgggggtcggcggccgggtccttggtg
gcttacgccctggcaattaccgacgtcgacccactccaatacgggctgttgtttgaacgg
ttcttgaacccggagcgcgcccagatgccagatatcgatttggacctgccggataaccgg
cgcgaggaggtcttaaactacctccaccaccactacggtcacgaacgagttgcccaaatc
atcaccttcggcagcttggggaccaagcaagtcctgcgcgacgtcagccgggtctttaac
ttacccaagtatcaggtcgaatcgctcagccaggtgatcgaccgggttaaggggccccac
cagaccctcgccgacctgttggaaagcgcccagccggtccaaaacctggcccgcgattcc
aagctcgtggcctgcctgctggaagtggcggccaagctagagggcttaccccgccacgat
tcgattcacgccgccggagttgtcttggccgccgaacctttgatcaagacggtgcccctg
caggccggtaacgagccgggggcgatgctcgtgacccagtttgaaaaagacaccgtcgaa
tcactggggctactcaaaattgacctgctgggtttgcggaacttaacgacggtggaaacg
gcgcttaacttgatccaccagcaccagccggactttgacctcacccacattgctttaaat
gaccgaccgacgctggccctttttgaccgcggccagaccagtgggatctttcagtttgaa
tcaagtgggatccgccaaaccttggtcaacttgcacccggataactttgaagagattgtc
gccgtcaacgccctttaccggccgggcccaatggacaacatcaaccacttcatcgccaga
aagaagggccaagaggcggttaacttgccggctaaggaactagccccgattcttgcaccg
acctacggaatcttggtttaccaagaacaggtcatgcaggtggcggcggtgatggggggc
tttagcctgggcgaggccgacttgttacgccgggcgatgagcaaaaagaaactagcgacc
atggcgagcatgaaggaggccttcttagccggggccaacaagcggggctacccgaacgcc
gttgccgaacaggtctttgcctacatcgaccagtttgccaactacggttttaaccgctcc
cacgcggttgcctattcgaagatggcctttgaaatggcctacttaaaggtccacttcccg
gccgaattcctagcggccctgatggaaaccgacccggataccagtaaggtctgggcctac
tttagcgaggctaagcaactagggattaccacccacggaccggcgatcaaccagagccaa
gaacgggtgagcctagtcgaccaggagttgtggctggggttagacatgattaaaggcctg
cgccgtgactttattcgggcaatcattgaagaacgcaaccaatacggcccctaccaggac
ttgcccgacctggtcaaccgcctcgacgccaagtggcacaaggaagccctctttgtaccc
ctgattgacgcgggggccttggatcaccttggttacaaccgagctgagatggccgagggt
ttaaaggcgattttggagggcgccgagtacgccggtttgggcttggggatggcacccgtg
gttgcccaacgcaatgagtacccgctcgccgttcgcctggcccgcgaacacgcggtcctc
ggaacttacctttcggggcacccggttagtcagtaccaagacctccgaaccaagttaaag
ttaccaaccgtggcccagctacggcctaaccagcgggtacggttggttttaatggtgacc
cgaatgcgaaaggtaacgaccaagcgcgagcacaaaccaatggcctttttaaccgctagt
gacgaaaccggggcagttgaagtgacgatctttaaccgcctcttcacccagctcgaaggt
gagttaagggtcaacgggatttacttgattacggccaagactgagcaacgagagggccag
gtccaactcttagccgatcaagtgaccgacgcccaggtggtcaaccgggaattacacccg
gccgaccaccgttgggtactccgcttacctagtggggttgcgcagaccacggtgaccgac
gggatcaaggccttggctaaggaacacgccggcaacgtcccagtggtgatttacgacccg
gtcactcaaaaagccactcaactgcccgggcaactgtggttagctaagcaacgggtggtc
caagagggtttgattaacctggtggggaggagcaatttggccttccaagcgttaagttag
DBGET
integrated database retrieval system
