Limosilactobacillus fermentum F-6: LBFF_0926
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Entry
LBFF_0926 CDS
T02669
Name
(GenBank) DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lff
Limosilactobacillus fermentum F-6
Pathway
lff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LBFF_0926
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lff03019
]
LBFF_0926
03400 DNA repair and recombination proteins [BR:
lff03400
]
LBFF_0926
Enzymes [BR:
lff01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LBFF_0926
Messenger RNA biogenesis [BR:
lff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LBFF_0926
DNA repair and recombination proteins [BR:
lff03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LBFF_0926
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
AAA_22
HEM4
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AGL88820
LinkDB
All DBs
Position
972900..974357
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AA seq
485 aa
AA seq
DB search
MTIDEQQVRTALKRFFGFADFRPGQRETIEATLAGKPTLAVLPTGAGKTLLYQLPGVMLD
GLVVVIAPLISLMQDQVDRLRSDGLGPVASLNSSLDYQEQQWVLSHLGELKFLFTSPETL
LKPAVLRALHRQPISLFVIDEAHCVSQWGPDFRPEYLRVAQAIQAVNPARLLMLTATATP
AIQDDIIQRLGLNPAAVVRVVKSVNRPNIFLAVQKLADQDEKRRRLLELVNQLGPSGVVY
LSSREGANQLADWLNQQANLRVAAYHAGVDPVDRYRIQQQFLGGELDLVVATSAFGMGID
KQDIRYVIHFQMPGSLEAYVQEIGRAGRDGRQSLAVLLYCHGDEQLPLLLNHVDLPSPAV
LDQIKAGKVKADLLGEAKRVVTYYLDQGMDGQAVWRFFADLEQKRGRQVQRMLSYVEEDK
CRRTNLLAYFGQASLEAEVEWCCDLTNRDWTVTALQLPAVKRRVASSVLDWRNRVATLFN
RQGLG
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
gtgaccattgatgaacaacaagtccgcaccgcactgaaacggtttttcggtttcgctgac
tttcgtcccggacaaagggagacgattgaagcgacgttggcggggaagccaaccctggcc
gtcttgccaaccggggccggcaaaaccctcctttaccaactcccgggggtaatgttagac
ggcttggtggtggtcatcgcccccctgatttccttgatgcaagatcaagttgatcgcctg
cgtagcgatggcttagggccggtggcgagcctcaattctagcctcgattaccaagagcaa
cagtgggtgctgagccacctaggggagcttaagtttttgtttacttccccggagaccttg
ctcaagcccgccgtattaagggcgttgcaccgtcaaccgattagcctgtttgtcatcgat
gaggcccactgcgtttcccagtggggccctgattttcgtccggaatacctccgggttgcc
caggccattcaagcggtcaaccccgcgcggctattgatgctgacggctacggctaccccc
gcaatccaagatgatatcattcagcgtctaggcctcaatccggccgcggtggtgcgggtc
gttaaatcggttaatcgccccaatattttcctggccgtccaaaaactagctgaccaagac
gaaaagcggcgccgccttctcgaactggtcaaccaattagggcccagtggggtggtctac
ctctccagccgtgagggggccaaccaattggcggactggttaaatcaacaagccaactta
cgggtggcggcttaccacgccggggttgaccccgttgaccgctaccgaattcagcagcag
ttcttaggtggagaattggacctagtggtggccacgtcggcctttgggatggggattgat
aaacaagacatccgttacgtgatccactttcagatgccggggagtttagaagcgtacgtc
caagagattggtcgggctggtagagatggccgccagtccttagccgtgctcttatattgt
cacggtgatgagcagttgccactattgttaaaccacgtcgatttaccaagccccgccgtc
ttagatcaaatcaaggcgggcaaggtgaaggccgatcttttaggggaggctaagcgcgtg
gtcacctactacctggaccagggaatggacgggcaggcggtgtggcgcttttttgcggac
ctagaacaaaagcggggccgccaggtgcaacggatgttaagttacgtcgaggaagacaag
tgccggcgaactaatttactagcctactttggccaagcaagtctggaggcggaggtcgag
tggtgttgtgacctgaccaaccgggactggacggtgaccgctttgcaactgcccgcggtc
aaacggcgagtggcttcgtccgtcctcgattggcgaaaccgggtcgcaactttgttcaac
cgacaggggttgggctag
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