Limosilactobacillus fermentum F-6: LBFF_1431
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Entry
LBFF_1431 CDS
T02669
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
lff
Limosilactobacillus fermentum F-6
Pathway
lff03030
DNA replication
lff03410
Base excision repair
lff03420
Nucleotide excision repair
lff03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lff00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LBFF_1431
03410 Base excision repair
LBFF_1431
03420 Nucleotide excision repair
LBFF_1431
03440 Homologous recombination
LBFF_1431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lff03032
]
LBFF_1431
03400 DNA repair and recombination proteins [BR:
lff03400
]
LBFF_1431
Enzymes [BR:
lff01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LBFF_1431
DNA replication proteins [BR:
lff03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LBFF_1431
DNA repair and recombination proteins [BR:
lff03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LBFF_1431
NER (nucleotide excision repair)
GGR (global genome repair) factors
LBFF_1431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_polI_exo1
5_3_exonuc
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
AGL89324
LinkDB
All DBs
Position
complement(1451585..1454335)
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AA seq
916 aa
AA seq
DB search
MASALFKGADKRRGAKFATMGAMTKKGRIKMAKQLLLIDGNSIVFRAFFAMHNQMEKFTN
QAGLHTAAIYGFKLMLDHILKEVQPDAALVAFDAGKTTFRTEKYADYKGSRDKTPGELVE
QLPYVRKLVEASGLHAYELVNYEADDIIGTLAKEGDQAGFETMIVTGDRDLTQLATDHTT
VAVTKRGVTQTEEFTPAYMQEKLGVTPRQYIDVKALMGDSSDNYPGVTKIGEKTAVSLIQ
EYGSLDGLYENIAAMKKSKRKENLINEEKIARECQDLATIHRDAPLAIGLKDIAYQGPDE
AALIDLYQELDFKSFLKELGAQEGGAQVDQAPIEYQVLDEDNMALVDQLGATVCFQLEMP
DANYHESPLAGFVVGDGKRWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHRL
GVDLAGVDFDLLLASYLLNTSENANDLGVLAAAHDYHQVQTDEEVYGKGAKRAIPADDEV
FFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITGIHVDAATLKE
MGSKLVEREAELEQAIYQEAGEEFNINSPKQLGVILFEKMKLPVIKKTKTGYSTAVDVLE
KLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQTLTATGRLSSVDPN
LQNIPVRLEEGRQIRRAFTPSAPGWKIFSSDYSQVELRVLAHVTGDKNMQADFLAGKDIH
AATAKRIFHLQSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNIHVSRPQAHEFIQSYFK
EFPGVEKYVHDIVELAKQQGYVETLTHRRRYLPEIHAKSFTQRSFAERMAMNTPIQGSAA
DIIKIAMIRMEKALKERGLRARMLLQIHDELVFEAPEEEIATLEELVPSIMDSAVKLDVP
LKVESKSGATWYDLKK
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcgctttatttaagggggcggacaagcggcggggcgcaaagtttgctacaatg
ggagcaatgactaagaagggacggataaaaatggctaagcagcttttattaatcgacggg
aatagcatcgtcttccgggcgtttttcgccatgcacaaccagatggagaagtttaccaac
caggcggggttacacacggcggccatctacgggttcaaactgatgctggatcacatatta
aaggaggttcaaccagacgccgccttggtggcctttgacgccggcaagaccacctttcgg
accgaaaagtacgccgattacaaggggagccgtgataaaacgccgggtgagctagtggaa
caactgccctacgtacgcaagctggtcgaagcaagtggcctccacgcttacgaactagtt
aattacgaggccgatgacatcattgggaccctggccaaggaaggggaccaggccggcttt
gagacgatgattgtgaccggggaccgtgatttgacccagctggccaccgaccacaccacc
gtggccgttaccaagcgcggggtgacccaaaccgaggagttcaccccggcatacatgcaa
gaaaagctgggcgtcaccccacgccaatacatcgatgtgaaggccctgatgggggatagc
tccgataactaccccggggttaccaagattggtgaaaaaacggcggtctccctgattcag
gaatacggctctttggacgggttgtacgaaaacatcgccgcgatgaaaaagtccaagcgc
aaggaaaacctgatcaacgaagaaaagattgctcgggagtgccaagacctagcgacgatc
caccgggacgctccgctggcgatcggcttaaaagacatcgcctaccagggaccggacgaa
gccgccctaattgacctgtaccaagaattagacttcaagtcctttttaaaggagctaggc
gcccaagaagggggcgcacaagttgaccaagcgccaatcgaataccaggtgttagacgaa
gacaacatggcgttggttgatcaactcggggctaccgtttgctttcaattagaaatgccg
gacgctaactaccacgaatcaccactggccggctttgtagttggcgatggcaagcggtgg
ctagtcagccgtaacgccgacctattaaccaccgccccgctaaagaagctactcgaagac
ccagcggttgaaaaggacgtcttcaacgccaaggcccagctggtcggcttacaccggtta
ggggttgacctggccggggtcgactttgacttgctcttggcttcttacctgctcaacacg
agtgaaaacgccaatgacttaggggtgctggcggccgcccacgattaccaccaggtccaa
actgatgaagaggtttacgggaagggtgctaagcgggccattccggctgacgacgaggtc
tttttcacccacctagccaaaaaggcccgggcgattagggaccttaaagaacccctatac
caacagctgaccgataacgagcaactaccgctctacgaagacattgaacgccccttgtcc
gcggtcttggcccacatggaaatcaccgggattcatgtcgacgcagcgaccctaaaggag
atgggctccaagttagttgaacgtgaggcggagctagaacaggcgatttaccaagaagcc
ggcgaggagtttaacattaactccccgaagcagctgggcgtaatcttatttgaaaagatg
aagctaccggtcatcaaaaagaccaagaccggctactcgacggccgtcgacgtcttagaa
aagctggccgaccgggcaccgatcgtccaagacatcttggcctaccggcaaatcagcaag
ctgcaatcaacttacatcaccggcttactcaaggtgatccaccaagacgaccaaaagatc
cacacccgctacttgcagaccctaacggcgaccggccgtctctcgtcagtcgatccgaac
ctgcaaaacattccggttcgcctggaagaagggcgccaaatccggcgggcctttaccccc
tcggcaccggggtggaagatcttttcgtcggactactcgcaggttgaactgcgggttttg
gcccacgtcaccggcgataagaacatgcaggctgatttcttggcgggcaaggacatccac
gccgccacggccaagcggatcttccacttgcaaagcgaagacgaagtgacccccaacatg
cgccggcaggccaaggcggtcaacttcgggattgtgtacgggatttccgattacggccta
gcccaaaacatccacgtctcccgcccacaggcccacgaattcatccagagttacttcaag
gaattcccgggggtggaaaagtacgttcacgacatcgtggaactggctaaacagcagggc
tacgtcgaaaccctgacccaccggcgccgttacctgccggaaattcacgcgaagtccttt
acccagcgttcctttgccgaacgaatggccatgaacaccccgattcaggggtcggctgcc
gacatcatcaagattgccatgatccgaatggaaaaggccttaaaggagcggggcttacgg
gcccggatgctcttacagatccatgacgaactggtctttgaagcgccggaagaagaaatc
gccaccttagaggagctggttccttccattatggactcggccgtaaagctagacgtacca
ctgaaggtggaaagcaagtccggggcaacctggtacgacctgaaaaaataa
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