Limosilactobacillus fermentum F-6: LBFF_1444
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Entry
LBFF_1444 CDS
T02669
Name
(GenBank) HD-superfamily hydrolase
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
lff
Limosilactobacillus fermentum F-6
Brite
KEGG Orthology (KO) [BR:
lff00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lff03019
]
LBFF_1444
Messenger RNA biogenesis [BR:
lff03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LBFF_1444
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
HDOD
Motif
Other DBs
NCBI-ProteinID:
AGL89337
LinkDB
All DBs
Position
complement(1463655..1464611)
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AA seq
318 aa
AA seq
DB search
MEIGNLTSGVATEGVALIKDAQLKTTRTGNPFLALLFADRTGEISGNLWDATENQVAQFK
AGVVVELAGQVETYQDQLQFRIQELRLASPEEGQPEDFVPRVAETDGELKDDLRPFLAAI
HQVEWATIVNHLFKKYGAPFFNFPAAKVNHHALVGGLAFHTLSILRLAKNVCDQYPGINR
ELLYAGALLHDMGKVIELSGPVATQYTTTGNLLGHISIVDGEIVACCQEVGLLPTNPQVV
LLRHVILAHHGLREYGSPVEPELMEAEVLHRLDELDAAITEINGALEQTAPGEFSPRQFA
LGRRQFYRLPTGQDTKKA
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atggagattggtaacttaactagcggggtggcgaccgaaggggtggcactgattaaggac
gcccagttaaagacgacccggaccgggaacccctttttagccctgctctttgccgaccgg
accggtgaaatcagcggtaacctttgggacgcaaccgaaaaccaggtcgcccaatttaag
gccggggtggtggtggagctcgccggccaggtcgaaacctaccaggaccagttgcagttt
cggatccaggagctgcgcctggctagcccagaggagggccaaccggaagactttgtgccc
cgggtggcggaaacggacggggaactaaaagatgacctgcggccctttttagcggccatt
caccaggtcgaatgggcgacgatcgttaatcatttgtttaaaaaatacggagcgcccttc
tttaacttcccggcggccaaggtcaaccaccacgccctggtcggtgggttggcctttcac
accctgtcgattttgcgcctggctaaaaacgtttgcgaccagtacccggggatcaaccgg
gaactcctgtacgccggcgcccttttgcacgacatgggtaaggtaatcgagttgtccggc
ccggtagcgacccagtacaccacgaccgggaacttgttgggccacatttccatcgttgat
ggcgaaattgtcgcctgttgccaagaggtcggtttattgccgaccaacccccaggtggtc
ttgcttcgccacgtcatattggcccaccacggcctacgtgagtacgggtcccccgttgaa
ccggagctaatggaagcggaggtcttacaccgcctagatgagctcgatgcggcgatcacc
gaaattaacggggcactagagcaaaccgccccgggtgaattttcgccccgccagtttgcc
cttggccgccggcagttctaccggctcccaaccggacaagacacgaagaaagcgtga
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