Limosilactobacillus fermentum F-6: LBFF_1613
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Entry
LBFF_1613 CDS
T02669
Name
(GenBank) 23S rRNA (Uracil-5-)-methyltransferase RumA
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
lff
Limosilactobacillus fermentum F-6
Brite
KEGG Orthology (KO) [BR:
lff00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lff03009
]
LBFF_1613
Enzymes [BR:
lff01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LBFF_1613
Ribosome biogenesis [BR:
lff03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LBFF_1613
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_15
Cons_hypoth95
Methyltransf_25
MTS
TRM5-TYW2_MTfase
PrmA
Methyltransf_11
Methyltransf_12
N6_N4_Mtase
UPF0020
RrnaAD
Ubie_methyltran
Methyltransf_23
Methyltransf_32
CMAS
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
AGL89503
LinkDB
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Position
complement(1631074..1632450)
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AA seq
458 aa
AA seq
DB search
MSKVQLPVHKNETVTGTVLDLTYQGNGVVKVDHYPIFVPNTLPGEEVTVKVTKVTKNFAW
GKLISIEKKSPDRIDDPNWAYLQTGIAPLGNLTYPAQLKFKQRQIQKLLEKAHLNLEVAE
TLGMDQPFGYRNKAQVPVRMVKGQPTTGFYKRGSHDLVPIEDFYIQDPAIDQTVLVVRDL
FRKYQVPAYDEETHRGVIRTVMVRRGYYSHQVMVVLVTNGEHFPHVAEITREISERVPGI
KSIVQNVNDKRTNVILGTKNHLLWGEPTIHDNLLGIDFTISPLSFYQVNPQQTERLYQTA
IENAGLDGSQTVIDAYCGIGTISLAVAKHAKHVYGVEIVPAAIADAKQNAANNGIENATF
LVGKAEEQFAKWQAEGLKPDVVIVDPPRKGLDAQLIEATGKMAPQKVIYVSCNPATLVRD
LQRFAEQGYHVTKPIQPVDQFPQTTHVESVTVLERTEK
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaggtgcaactaccagttcataaaaacgaaacggtcacggggacggtcctcgac
ctgacttaccaagggaacggggtcgtcaaggttgatcactaccccatttttgtgcccaac
accttgccgggcgaagaggtaacggtcaaggtaactaaggtgaccaagaacttcgcctgg
ggcaagctgatcagcattgaaaagaagagcccggaccggatcgatgaccccaactgggcc
tacctacagacggggattgcgccgttagggaacctgacttacccggcccaactcaagttt
aagcagcgtcaaattcaaaaactcttggaaaaggcccacctaaacttagaagtggccgaa
acgctggggatggaccagccctttggttaccgcaataaggcccaagtcccggtgcggatg
gtcaagggccaaccgacgaccggtttttacaaacgtggtagccatgacctggtgccaatt
gaagacttttacatccaggacccggcaattgaccaaaccgttttggtggtccgcgacctc
tttcgtaagtaccaagtgccggcttacgatgaagaaactcaccgcggcgtaatccggacg
gtgatggtccgccggggctactacagccaccaggtgatggtggtcctggtcactaacggg
gagcatttcccgcacgtcgcagaaattacccgggaaataagtgaacgggtgccgggaatt
aagagcatcgtgcaaaacgtcaatgataagcggaccaacgtcattttgggaacgaagaac
cacctgttgtggggggaaccaaccatccacgacaacctcttggggatcgacttcacgatt
tcgccgctctccttttaccaggtcaacccgcaacaaaccgagcgcctctaccagaccgcc
attgaaaatgccggactagacggaagccagaccgttatcgatgcttactgtgggattggg
acgatctctttagccgtggctaagcacgccaagcacgtttacggggtcgaaatcgtgccg
gccgccattgcagacgccaagcaaaacgccgccaataacgggatcgaaaatgcgaccttt
cttgttggcaaggccgaagagcagtttgccaagtggcaagccgagggtctcaaacctgat
gtggtgattgttgacccaccgcgtaagggcttggatgcccaattgattgaggccaccggt
aagatggcgccccaaaaggtgatttacgtctcctgcaacccggcgactttggtccgcgac
ttacaacgcttcgccgaacagggctaccacgtgaccaagccgatccaaccggtcgaccag
ttcccgcagacgacgcatgttgagagtgttactgtgctggaacgtacagaaaaatag
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