Limosilactobacillus fermentum F-6: LBFF_1677
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Entry
LBFF_1677 CDS
T02669
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lff
Limosilactobacillus fermentum F-6
Pathway
lff03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lff00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LBFF_1677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lff03021
]
LBFF_1677
03400 DNA repair and recombination proteins [BR:
lff03400
]
LBFF_1677
Enzymes [BR:
lff01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LBFF_1677
Transcription machinery [BR:
lff03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LBFF_1677
DNA repair and recombination proteins [BR:
lff03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LBFF_1677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AGL89567
LinkDB
All DBs
Position
complement(1678031..1681678)
Genome browser
AA seq
1215 aa
AA seq
DB search
MIDVNNFESMEIGLASPMKIRSWSYGEVTKPETINYRTLKPEKDGLFDERIFGPTKDFEC
ACGRYKRARYNKRVCERCGVEVTSAKVRRERMGHIELAAPASHIWYFKGIPSRMGLVLDM
SPRELEEVIYFASYVVLDAGDTGLEKKQLLSEPRYRELKEEYGNRFTAEMGAEAIQKLLA
DVDLAKEATELKAVLKEATGQKRTRAVRRLDILEAFIKSGNKPEWMVMDVIPVMPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLELNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHLLKGKQGRFRQNLLGKRVDYSGRSVIDVGPSMKMNQMGLPVP
MAMELFKPFIIHELTKRNLATNVKAAKRMIDKRDEKVFDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPILVSGKAMRLHPLVCAAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAHHIL
SPRDGEPIVAPSQDMVIGNYYMTTEDKAREGEGMIFKDTNEARMAYRNGYVALQTRVGVL
TSSFDKKPFTAEQRQKIMVTSVGKLLFNNIMPEDYTYINEPTADNLQNGVPDKYFLEPGE
DIHAYLENAPLVPPFKKGFLSDIIADVYKIYKVTVTSQLLDRIKDLGYYESTISGLTVGI
ADVTDLKEKPEIIEKAHKQVALVTKQFRRGLITDNERYERVIGIWNDAKDEVQNKLIEHM
DIHNPINMMSDSGARGNISNFTQLAGMRGLMASPSGKIMELPILSNFREGLSVLEMFISS
HGARKGMTDTALKTANSGYLTRRLVDVAQDVIVREKDCGTDRGLEVTAITNGNEMIEPLY
DRILGRYTMKSVFNPETGEKIVGKNVLLNEEMAQKIIDAGVQKVTIRSAFTCNTEHGVCE
RCYGRNAATGDQVEAGEAIGTVAAQSIGEPGTQLTLRNFHTGGVAGNDDITQGLPRIQEI
VESRNPKGKATISEVTGQVVSIEENPAEQTKDVTIKGETDTRTYTLPITARMRVAEGDDI
HRGRAINEGSIDPKEMIRVRDVLSTETYLLSEVQNVYRMQGIDLLDKHVEIMIRQMMRKV
RVMDPGDTDVLPGELLDISQFRDANYQTLISGGIPATARPVILGITKAALETNSFLSAAS
FQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMGAYRNIKPKEVSVNTGATDGA
ITSIREMEEQLKDQD
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
ttgattgacgtcaataattttgaaagtatggagatcggtctggcttccccaatgaagatc
cggagttggtcttacggtgaggttaccaagccggaaacgatcaactaccgaactttaaag
ccagaaaaagacggtctctttgatgaacgaatcttcggcccgaccaaggactttgaatgt
gcctgtggtcgctacaagcgggcgcgttacaacaagcgggtctgtgagcgttgtggggtt
gaagtaacctctgccaaggtccgccgggaacggatgggtcacattgaactggctgctcct
gcttctcacatctggtacttcaaggggattccaagccggatggggctggtcttggacatg
agcccacgggaactggaagaagtaatctactttgcttcttacgtcgttttagacgccggg
gacacgggactggaaaagaagcaattgctttccgaaccacgttaccgggaactcaaggaa
gaatatggcaaccgtttcaccgctgagatgggggccgaggcgatccaaaagctactggcc
gacgtagacctggccaaggaagcaaccgaattaaaggcggtcttaaaggaagcaactggg
caaaagcggacccgcgcggttcggcgcctggatatcttggaagcctttatcaagtccggg
aacaagcctgaatggatggtgatggacgtaattccggttatgccacctgacttacggccg
atggttcaactggaaggtggccgctttgccacttccgacttgaacgacttgtaccggcgg
gtcattaaccggaacaaccggttgaagcgcctgttagaattaaacgctccgggcatcatc
gttcaaaacgaaaagcggatgctccaagaagccgttgacgccctgattgataacggtcgc
cgtggccgtccggttgccggtcctggtaaccgtccgctcaagtccttgtcccacttactt
aaggggaagcaaggacggttccgtcaaaacctgctcgggaagcgggtcgactactctggt
cgttccgttatcgatgttggtccatccatgaagatgaaccaaatggggttgccggttcca
atggcgatggaactcttcaagccatttatcattcacgaactgaccaagcggaacctggct
accaacgttaaggcagccaagcggatgatcgacaagcgtgacgaaaaggtcttcgatgtc
ttagaagacgtgattaaggaacaccctgttctcttgaaccgcgcccctaccctgcaccgg
ttagggatccaagccttcgaaccaatcctggtttccgggaaggccatgcgtttgcaccca
ctggtttgtgccgcttacaacgccgacttcgacggggaccagatggccatccacgtacca
ctgtccgatgaagcccaggccgaagcgcgtctgttaatgttagccgctcaccacatcctt
tcacctcgtgacggggaaccaatcgtggccccatcccaggatatggttatcggtaactac
tacatgacgactgaagacaaggcccgtgaaggggaaggtatgatctttaaggacaccaac
gaagcccggatggcctaccgtaacggttacgtggccttacaaacccgggttggggtgctg
acttcttcctttgacaagaagccgttcaccgctgaacaacgccaaaagatcatggtgacc
tcggttgggaagttgctcttcaacaacatcatgcctgaagattacacttacattaacgaa
ccgaccgccgacaacctgcaaaacggggttccggacaagtacttcttggaacctggtgaa
gacattcacgcctacttagaaaacgcgccgctggtgccaccgtttaagaagggcttcttg
tcggacatcattgccgatgtttacaagatctacaaggtgaccgtcacctcccaacttctt
gaccggatcaaggaccttggttactacgaatccacgatttccgggttaaccgtcgggatc
gccgacgtgaccgacttaaaggaaaagccggaaatcatcgaaaaggcgcacaagcaagtg
gccctggttacgaagcaattccgccgtggtttgatcaccgataacgaacgttacgaacgg
gtcattgggatctggaacgatgccaaggatgaagttcaaaacaagctgatcgaacacatg
gatatccacaacccaatcaacatgatgtccgactctggggcccgggggaacatctccaac
tttacccagctggccggaatgcgtgggttgatggcttccccatccgggaagatcatggaa
ctgccgatcctttctaacttccgggaaggcctttccgtcttggaaatgtttatctcttcc
cacggggcacggaaggggatgaccgacacggccttgaagactgccaactctggttacttg
acccggcggctggttgacgtggcccaagatgtgatcgttcgcgaaaaggactgtggcacc
gaccgtggtctggaagtgaccgccatcactaacgggaacgaaatgatcgagccgttatac
gaccggattttgggtcgttacacgatgaagtctgtctttaatccagaaaccggggaaaag
atcgtcggtaaaaacgtcctcttgaacgaagagatggcgcaaaagattatcgatgcgggc
gttcaaaaggtaacgattcgctccgccttcacttgcaacaccgaacacggggtttgtgaa
cgttgttacggacgcaacgccgctaccggggaccaagtggaagccggggaagcaatcggg
acggtggccgcacagtcaatcggtgaaccagggacccagctgacgctgcggaacttccac
accggtggggtggccggtaacgacgacatcacccaagggcttccgcgtatccaagaaatt
gtggaatcacggaacccgaaagggaaggccacgatctccgaagttactggtcaggtggtt
tccatcgaagaaaacccagctgaacaaactaaggacgttacgatcaagggtgaaaccgac
acgcggacttacaccctgccgatcacggcccggatgcgggtggccgaaggtgatgatatt
caccgtggtcgcgccatcaacgaagggtcaattgatccaaaggaaatgattcgggttcgc
gacgtcttgtccacggaaacctacctgctctccgaagtgcaaaatgtttaccgtatgcag
gggattgacctgctcgacaagcacgttgaaatcatgattcgccaaatgatgcgtaaggtg
cgggtgatggatcctggtgatactgatgttttaccgggtgaactgttggacatcagccaa
ttccgcgatgctaactaccaaaccttgatttccgggggaattccggccactgcccggcca
gttatcctcgggatcactaaggcggcccttgaaactaacagtttcctttcggccgcttcc
ttccaagaaacgacgcgtgtccttaccgacgccgccatccggggcaagaacgacccgctg
gtggggctcaaggaaaacgttattatcgggaagatcattccagccggaacggggatgggt
gcttaccgcaacatcaagcccaaggaagtcagtgtcaacactggcgcaaccgatggggcc
attacctccatccgcgaaatggaagaacaactaaaggatcaagactaa
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integrated database retrieval system
