Limosilactobacillus fermentum F-6: LBFF_1678
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Entry
LBFF_1678 CDS
T02669
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lff
Limosilactobacillus fermentum F-6
Pathway
lff03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lff00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LBFF_1678 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lff03021
]
LBFF_1678 (rpoB)
03400 DNA repair and recombination proteins [BR:
lff03400
]
LBFF_1678 (rpoB)
Enzymes [BR:
lff01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LBFF_1678 (rpoB)
Transcription machinery [BR:
lff03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LBFF_1678 (rpoB)
DNA repair and recombination proteins [BR:
lff03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LBFF_1678 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AGL89568
UniProt:
A0A806J103
LinkDB
All DBs
Position
complement(1681716..1685288)
Genome browser
AA seq
1190 aa
AA seq
DB search
MAGHLVKYGKHRTRRSYSRIKEVLDLPNLIEIQTDSYNWFMDKGLREMFDDIMPIDDFQG
KLSLEFVDYQLLEPKYTVAEAREHDANYSAPLHVTLRLTNHETGEIKSQDVFFGDFPLMT
DQGTFIINGAERVIVSQLVRSPGVYYNEEADKNGRPSYGANFIPNRGAWLEYETDAKGIS
YVRIDRTRKLPITELVRALGFGSDDEIWDMLGSESESLNATIEKDLHKEPEDSRVEESLK
DIYERLRPGEPKTADSARSLLTTRFFDPKRYDMAPVGRYKTNKKLQMKYRLLGLTLAETL
ANPETGEIIAKDGDVITKEVLKELEPVLEQDDFKMITYTPSDEAVVTAPVQLQKIMVYSK
KDPERKVPVVSNGHISLDLKHIQPADILASINYFLNLQEGIGTTDDIDHLGNRRIRSVGE
LLQNQFRIGLARMERVVRERMSIQDINTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQT
NPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSY
ARVNAYGFIETPYRRVSWADHKVTDRIDYLTADEEDNFIIAQANTPLNEDGSFVHDEIMC
RDKEDYIETAPENVDYMDVSPKQVVSVASACIPFLENDDSNRALMGANMQRQAVPLINPH
APLIGTGIEYKAAHDSGVALIAKNSGTVEYVDAREVRVRQEDGTLDTYKLMKFRRSNGGK
NYNQRPIVKVGEWVDADDVLADGPSMEQGELALGQNPLIAFMTWQGYNFEDAIAINERLV
KDDVYTSIHIESYESEARETKLGPEEMTREIPNVSEDARKNLDESGVIRVGAEVHDGDIL
VGKVTPKGVTELSAEERLLHAIFGEKSREVRDTSLRVPHGGGGIIQDVKVFTRENGDELA
PGVNKMVRVYIAQKRKIQVGDKMSGRHGNKGTVSIVVPEEDMPYMPDGTPIDIMLSPMGV
PSRMNIGQVIELHLGMAARELGIHIATPVFDGANDQDVWDAVKEAGLPSDGKTILYDGRT
GEPFEQRVAVGVMHYLKLAHMVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWA
LEAYGAAYTLQEILTYKSDDTVGRVNTYQAIIDGDQIPKPGVPESFRVLVKELQSLGLDM
KVLDDKHEEIQLKSMDEDVADVRKLARRGHETLEEQPAQATSAQDEAKQD
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
ttggctggacacttagttaagtacggtaagcaccgtacccgtcgttcttactcccgaatc
aaggaagtcttggacctgcctaacttgatcgagattcaaaccgattcttacaattggttt
atggacaagggtttgcgggaaatgtttgacgacattatgccgatcgatgatttccagggg
aagctatccttggaattcgttgactaccaattgttggaaccaaagtacacggtcgctgaa
gcgcgtgaacatgacgcaaactactcagcaccactgcacgtaacgttacgcctgaccaac
cacgaaacgggcgaaatcaagtcccaagacgtcttctttggtgacttcccactgatgacg
gaccaagggaccttcatcatcaacggggccgaacgggttatcgtatcccaattagttcgt
tccccaggggtttactacaacgaagaagccgacaagaatgggcgcccaagctacggtgcc
aacttcatcccgaaccggggggcttggctagaatacgaaaccgacgctaagggaatttcc
tacgtccgtatcgaccggacccgtaagctaccaattacggaattagttcgggcccttggt
tttggttccgatgacgaaatttgggacatgttggggagcgaatcagaatccctgaacgcc
accattgaaaaggacctacacaaggaaccggaagactcccgggttgaagaatccttaaag
gatatctacgaacggctccgtccaggtgaaccgaagacggccgactccgcacggtccctt
ttgacgacccgcttctttgatccaaagcgctacgacatggcgccagttggtcgttacaag
actaacaagaagctgcaaatgaagtaccgtttgttaggcctgaccctggctgaaaccctg
gccaacccagaaaccggtgaaattatcgccaaggacggggacgtcatcactaaggaagtc
ttaaaggaactcgaaccggttctggaacaagacgactttaagatgatcacctacacgcca
tccgatgaagcagtggtaaccgcgccggttcaactgcaaaagatcatggtttactccaag
aaagaccctgaacgcaaggtgccggtggtatctaacggtcacatctccttggacttaaag
cacatccaaccagccgacatcctggcttcgatcaactacttcttgaacttacaagaaggg
atcgggactaccgatgacatcgaccacttgggtaaccggcggattcgttccgttggggaa
ctgttgcaaaaccaattccggatcgggctcgcccggatggaacgggtggttcgcgaacgg
atgtcaatccaagacatcaacaccgtaacgccacaacaactgatcaacattcgcccagtc
gtggcttcaattaaggaattctttggttcctcccaactttcccagttcatggaccagacc
aacccactgggtgaattgacccacaagcggcgtctgtccgccctgggaccgggtggtttg
acgcgtgaccgggccggttatgaagtccgggacgttcactatacccactacggccggatg
tgcccaatcgaaacgccggaaggaccgaacatcgggttgatcaactcgctgtcctcttac
gcccgggtgaacgcatacggctttatcgaaacgccgtaccgtcgtgtctcatgggccgac
cacaaggtaaccgaccggatcgactacctgacggccgacgaagaagataacttcatcatc
gcccaggccaacacgccactgaacgaagatggttcctttgttcacgacgaaatcatgtgc
cgtgataaggaagactacatcgaaacggcgccagaaaacgtcgactacatggacgtttcg
ccaaagcaagtggtttccgttgcctccgcatgtattccgttcttggaaaacgacgactcc
aaccgggccttgatgggtgccaacatgcaacggcaagccgttccgttgattaacccacac
gctccgttgatcgggaccgggattgaatacaaggccgcccacgactccggggtcgctttg
atcgctaagaacagtgggaccgttgaatacgttgacgcccgcgaagtacgggtacgccaa
gaagacggaacgttagacacttacaagctgatgaagttccgccgctctaacggtggtaag
aactacaaccaacggccaattgttaaggttggcgaatgggttgacgctgatgacgtctta
gccgacggaccatcaatggaacaaggggaattagcccttggtcaaaacccactgatcgcc
ttcatgacttggcaaggttacaacttcgaagatgccatcgccattaacgaacgcctagtt
aaagacgacgtttacacttcgatccacatcgaatcttacgaatccgaagcccgcgaaact
aagctcggaccagaagaaatgacgcgcgaaattccaaacgtcagtgaagacgcccgcaag
aaccttgatgaatccggggtgattcgggtaggggccgaagtccacgatggtgacattttg
gttggtaaagtaacgccaaagggggttaccgaactatccgccgaagaacggctcttacac
gccatctttggtgaaaagtcacgcgaagtccgtgatacctccctcagggtgccacacggc
ggtggcgggatcatccaagacgtgaaggtctttacccgcgaaaacggtgacgaattagcc
ccaggggttaacaagatggtccgtgtttacatcgcccagaagcggaagatccaagtcggg
gacaagatgtccggtcgtcacgggaacaaggggacggtttcgatcgtcgttccagaagaa
gacatgccgtacatgccagatgggaccccaattgacattatgctgtcaccaatgggtgtg
ccgtcccgtatgaacatcggtcaggtgatcgaacttcacttggggatggctgctcgcgag
ctggggatccacattgccacgccagtctttgatggtgccaacgaccaagacgtttgggat
gccgttaaggaagccggcttgccgtccgatgggaagacgatcctttacgatggtcggacc
ggggaaccatttgaacaacgggttgccgttggggtcatgcactacctgaagctggcccac
atggttgacgacaagatccacgcccgttcgactggtccatactcactggttacccaacaa
ccacttggggggaaggcccaattcgggggacagcggttcggtgaaatggaagtttgggcc
ctggaagcatacggggctgcttacaccctgcaagaaatcttgacttacaagtctgacgat
acggtcggccgggtaaatacttaccaagccatcattgacggggaccaaattccaaagcca
ggggtaccggaatccttccgtgtgctggttaaggaattgcaatcccttgggttagacatg
aaggtcttagatgacaagcacgaagaaatccagcttaagagcatggatgaagacgttgct
gacgttcggaaactggcccgccgtggccacgaaacgctggaagaacaaccagcgcaagcg
acgagcgcccaagacgaagccaagcaagattag
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integrated database retrieval system
