Limibacterium fermenti: ABNK31_00040
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Entry
ABNK31_00040 CDS
T10860
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit UvrA
KO
K03701
excinuclease ABC subunit A
Organism
lfg Limibacterium fermenti
Pathway
lfg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lfg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABNK31_00040 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfg03400
]
ABNK31_00040 (uvrA)
DNA repair and recombination proteins [BR:
lfg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABNK31_00040 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ABNK31_00040 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
UvrA_inter
SMC_N
UvrA_DNA-bind
AAA_21
AAA_29
nSTAND1
AAA_16
DnaJ_CXXCXGXG
RsgA_GTPase
nSTAND6
RNA12
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
XGS83358
LinkDB
All DBs
Position
8828..11626
Genome browser
AA seq
932 aa
AA seq
DB search
MSDSKYIEIKGARVNNLKNIDVNIPRNTFTVITGLSGSGKSSLAFDTLYAEGQRRYVESL
SAYARQFLGRMNKPECDYIKGIPPAIAIEQKVNTRNPRSTVGTSTEIYEYLRLLYARIGR
TISPVSGAEVKRHYVHDVVEKMLQYREGTRLAVLSAVQLRNGRNLREQLEILQKEGFTRV
DVDGQFYRIDELLQQKNIPSEEEVLIVIDRLSCSSDKSTVNRLSDSVETAFLEGDGECVI
RFWTPDGTESFTFSNRFEADGITFEEPTPLMFSFNSPVGACPVCEGFGKVIGIDENLVIP
DKSLSVQEECVQCWKGEKMSEWRREFVANAYKADFPIHRAYYDLNDTERDILWNGRPDLG
IYGINDFFQMLEQNLYKIQYRVMLARYRGKTVCPACKGARLKPEAFYVKVGGRSIGDLVM
LPVSELKTFFDELQLDETDAGIAKRLLIEIHNRLQFLLDVGLGYLTLNRLSNTLSGGESQ
RINLASSLGSSLVGSLYILDEPSIGLHSRDTHLLIKVLRDLQKLGNTVVVVEHDEDIIRA
ADYIIDIGPKAGRLGGEVLYQGEVAHLMTNTDSYTVKYLTGEERIEVPAVRRKWNNYIEV
KGARQNNLKNINVKFPLNVMTVVTGVSGSGKSSLVNDVFYNGLLHHYQGSSLQQAEFNGL
AGDLKLVKNVEYVDQNPIGKSSRSNPVTYLKVYDEIRKLYAAQPLAKQMGFKPAYFSFNV
EGGRCEECKGEGTITVEMQFMADIKLVCESCHGKRFSPEVLEVEYQGLNIYDILEMTVDQ
AIEFFGAQKGATEKKIAKKMQPLQDVGLGYIKLGQSSSTLSGGENQRVKLAYYLGEEKAD
PTLFIFDEPTTGLHFHDIKTLLKAFNALIDRGHTVLIIEHNMEVIKTADYVIDIGPEGGK
EGGYVVATGTPEEIAACEASYTGRFLKEKLAN
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgagtgattccaaatacattgaaataaagggtgctcgcgtcaacaatctcaaaaatata
gacgtaaacatcccccgaaataccttcaccgtgattaccggactttccggatcgggcaag
tcgtccctcgccttcgacacgctgtatgccgaaggccagcggcgctatgtggaaagcttg
tcggcctatgcgcgacagttcctcgggcgcatgaacaagcccgagtgcgactacatcaaa
ggcatcccgccggccatcgccatcgagcaaaaggtgaatacgcgcaatccccgttcgacg
gtcggtacctccaccgaaatatacgaatatctgcgcttgctgtatgcccgcatcggcagg
accatttcgcccgtgtcgggcgccgaagtcaagcgccattacgtgcacgatgtggtggag
aagatgttgcaataccgcgaagggacgcgtttggccgtgttgtcggccgtgcagttgcgg
aacggacggaatctgcgggagcaattggagattttgcagaaagaaggtttcacgcgggtc
gatgtcgacgggcagttttaccgtatcgatgagctgttgcagcagaagaacatcccgtcg
gaggaggaagtgcttatcgtcatcgaccgtttgtcgtgctcttcggataagtcgacggtc
aaccgcctttccgattcggtggaaaccgcctttctggaaggcgacggggagtgtgtcatc
cgtttctggacgcctgacgggacggaatcgtttaccttttccaaccgctttgaagccgac
ggcattacgtttgaagagccgacgcctttgatgttcagtttcaatagtcccgtgggcgcg
tgccccgtgtgcgaaggtttcggaaaagtcatcggcatcgatgaaaacctggttatcccc
gacaagagcctgtcggtgcaggaagagtgcgtgcaatgttggaagggagagaagatgagc
gagtggcggcgcgagtttgtggccaacgcctacaaagccgacttccccattcaccgggct
tattacgacctgaacgataccgaacgcgatatcctttggaacgggcgccccgatctgggc
atttacggcattaacgattttttccaaatgctggagcagaatctttataagatccagtac
cgtgtcatgctggcccggtaccgtggaaagacggtttgtccggcatgcaagggcgcgcgg
ctgaaacccgaagcgttttatgtgaaagtaggcggccggtcgataggagatttggtaatg
ctgccggtgtcggagttgaaaacgttttttgatgagctgcaactcgacgagactgacgcc
ggcatcgccaaacgcctgctcatcgagatccataaccgccttcagtttttgctcgatgta
ggattgggatatcttacgctcaaccggttgtcgaatacgctgtcggggggcgaaagccaa
cgcatcaacctggcctcgtcgctgggcagcagccttgtcggttcgctgtatatcctcgac
gagccgagcatcgggttgcattcgcgcgatacgcatttgctcatcaaggtgctgcgcgac
ctgcaaaagctcggcaatacggtagtggtggtggaacacgatgaagacatcatccgagcg
gccgattatattatcgacatcggccccaaggcggggcggctcggcggagaagtgctttat
cagggcgaagtggcgcatctgatgactaataccgacagttatacggtgaagtatcttacc
ggcgaggagcgcatcgaggtgcctgccgtacgccgcaagtggaacaattatatagaggtg
aaaggcgcgcggcaaaacaatctgaaaaatatcaacgtcaagttcccgctcaatgtcatg
acggtcgtcaccggagtgagcggctcgggcaaatcgtcgctggtgaacgatgtgttttat
aatgggctgttgcatcattatcagggatcttcgttgcagcaagccgagttcaacgggttg
gcgggcgacctgaaactggtgaaaaacgtggagtatgtcgatcagaatcccatcggtaaa
tcgtcgcgctccaatccggttacgtatttaaaggtgtatgacgaaatccggaagctgtat
gccgcccagccgcttgccaagcagatgggtttcaagccggcctatttttcgtttaatgtc
gaaggcggacggtgtgaagagtgcaagggcgagggaaccatcacggtggaaatgcagttt
atggccgacatcaagctggtgtgtgaatcgtgccacggcaaacgtttttctcccgaagtg
ctcgaagtggaataccagggactgaacatttacgatattctggagatgacggtcgaccaa
gccatcgaattctttggcgcacaaaaaggcgctacggagaagaagatcgccaaaaagatg
caaccgctgcaagatgtgggactcggatacatcaagctcggacagtcgtcttccaccttg
tcgggaggagaaaaccagcgggtgaagctggcgtattacctcggggaagaaaaagccgac
cccacgttgtttatcttcgacgaacccaccacggggcttcacttccacgatatcaagacg
ctgctgaaggcgtttaacgcgctcatcgaccgggggcataccgtgctgattatcgagcac
aatatggaggtgattaaaacggccgattatgtaatcgatataggtcccgaaggaggaaaa
gagggcggatatgtggtggctacggggacgccggaagaaatcgccgcttgcgaggcatcg
tataccggacggtttctgaaggaaaaattagctaattag
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