KEGG   Limibacterium fermenti: ABNK31_01260
Entry
ABNK31_01260      CDS       T10860                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
lfg  Limibacterium fermenti
Pathway
lfg02020  Two-component system
Brite
KEGG Orthology (KO) [BR:lfg00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    ABNK31_01260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lfg03021]
    ABNK31_01260
Transcription machinery [BR:lfg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     ABNK31_01260
SSDB
Motif
Pfam: Sigma70_r4_2 GerE Sigma70_r2 Sigma70_r4 Sigma70_ECF PhyR_sigma-like HTH_23 HTH_28
Other DBs
NCBI-ProteinID: XGS83586
UniProt: A0ACH2UF27
LinkDB
Position
complement(279861..280430)
AA seq 189 aa
MDINHFSLDQINKMDAAAFRALYKAYYKALVGYSIQMVGEVEAAEDIVGTFFTTLWEKKL
SFRSLISLQTYLYNSVRNASLNYLKHKDIESDHLQKVADHYKEHYFAGEDADDFFSEEIY
RLLFQAIDALPKRCREVFLLAMEGKKNDEIAAILQVSLETVKTQKKRGMSSLRTKLINQS
LVFLEFLLL
NT seq 570 nt   +upstreamnt  +downstreamnt
atggatatcaatcatttctctttggatcagattaataaaatggatgcggcggctttccgt
gcgctttataaggcctattataaagcgttggtgggctattccatacagatggtcggcgaa
gtggaagccgcagaagacattgtcggaaccttctttacgactctttgggagaagaaatta
tcttttcgatcattaatatccctgcaaacctatctttacaattcggtacggaacgcttcg
ttgaattatcttaagcataaagatattgagagcgaccacctacagaaagtcgcagaccat
tataaagagcattatttcgcaggagaggacgccgacgattttttcagtgaggaaatctat
cgtttgctttttcaggctatcgatgccctgccgaaacggtgcagggaagttttcctgctt
gccatggaagggaagaaaaatgacgagattgcggcgatacttcaggtttcactggaaacg
gtaaagacccaaaaaaaacgaggaatgtcttccctccggacgaagttaatcaatcaatcc
ctggtattccttgagtttttacttttataa

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