Limibacterium fermenti: ABNK31_04410
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Entry
ABNK31_04410 CDS
T10860
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lfg Limibacterium fermenti
Pathway
lfg03020
RNA polymerase
Brite
Enzymes [BR:
lfg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABNK31_04410 (rpoC)
Transcription machinery [BR:
lfg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABNK31_04410 (rpoC)
DNA repair and recombination proteins [BR:
lfg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABNK31_04410 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XGS84167
LinkDB
All DBs
Position
967933..972216
Genome browser
AA seq
1427 aa
AA seq
DB search
MAFRKDNKIKSNFSKITIGLASPEQILESSYGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERTGHIHLVVPVAHIWYFRSLPNKI
GYLLGIATKKLDSIIYYERYVVVQPGVLEDKVAERDLLTEEEYLELLEGLPKDNQLLEDT
DPNKFIAKMGAEAILDLLERINLDKLANQLRNRASTDTSQQRKNEALKQLQVVEAFRSSR
NINKPEWMIMKVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLMDIKAPD
VILRNEKRMLQEAVDSLFDNSRKSSAIKTESNRPLKSLSDSLKGKQGRFRQNLLGKRVDY
SARSVIVVGPELKMNECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVVY
DILEYVMKGHPVMLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAFNADFDGDQMAVH
LPLGNEAILEAQLLMLGSHNILNPANGAPITVPSQDMVLGLYYITKIRPHAKGEGLIFYG
EEEAIIAYQEGKVDIHAPVKVIVDDIDEEGNPIRKMHDTSVGRVITNEYIPKEVGYINEL
LSKKSLRDIIGKVIKTCGVARTAQYLDDIKALGYKMAFKGGLSFNLEDVIIPKEKETLIK
QGYDEVEQIMENYNMGFITYNERYNQIIDTWTHINSKLSNILMKQLAEDDQGFNSVYMML
DSGARGSREQIRQLSGMRGLMAKPQKSGAEGGQIIENPILSNFKEGLSVLEYFISTHGAR
KGLADTALKTADAGYLTRRLVDVSQDVIITEEDCGTLRGLVATAIKKNDEVIASLYERIL
GRVSVHDVQHPTTGEILVQSGEEITEEIARKIEESPIERVEIRSVLTCESHHGVCAKCYG
RNLVTGRLVQKGEAVGVVAAQSIGEPGTQLTLRTFHVGGIASNIAAESQIAAKYDGILQF
DELRVVDVKDAEGKPYKVVVSRLVEMRIVDPNTKIVLLTHNVPYGSKLYFGEGDKVQKGE
LICEWDPFNAVIISEATGTIKFESFTEGGTYKVESDEQTGLKEKVIIESRDKTKAPSAHI
VNEDGDILRTYTLPLGAHIVRNENDTIKAGDVLVKIPRAVGKAGDITGGLPRVTELFEAR
NPSNPAVVAEIDGEVSFGKIKRGNQEIMITSKIGEVKKYLVPLSKQILVQENDFIRAGMP
LSDGAITPADILAIMGPTAVQEYIVNEVQDVYRLQGVKINDKHFEVIVRQMMRKVEVIDP
GDTRFLEQQLVDKLDIMEENDRIWGKKVIMDAGDSQVFEPGQIVTVRKLRDENSSLKRRD
LKLVEARDAVPATANQILQGITRAALQTTSFMSAASFQETTKVLNDAAINGKVDLLEGLK
ENVICGHLIPAGTGQRDFDKLIVGPREEFEKLKSNKRSNLFQEVEEE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atggcatttagaaaagacaataaaataaagagtaacttttcaaaaattactattggctta
gcttctcccgaacagattttagagagttcttacggtgaagtcttaaagcctgaaactata
aactatcggacgtataaacccgaacgtgacggtttgttttgtgaacgtattttcggaccc
gtaaaagactatgaatgtcattgcggtaagtacaagagaatccgttacaagggtatcgtg
tgtgatcgatgcggtgtggaagtgaccgaaaagaaggtgcgtcgcgaacgtaccggacat
attcatttggtcgttccggttgcccatatctggtatttccggtcgttgcccaacaagatc
ggttatttgttgggaatagccaccaagaaactcgattcgatcatttattacgaacggtac
gtcgtggtacaacccggtgtgctggaagacaaagtagccgaaagagaccttcttacggaa
gaagaatatctggaactgctggaagggcttccgaaagataatcaattgttggaagatacc
gatccgaataaatttattgccaagatgggcgccgaggctattttggatcttctggaacgt
atcaatctcgacaaattggccaatcaacttcgtaaccgggccagcaccgatacgtcgcaa
caacgtaagaacgaagctttgaaacaacttcaggtggtcgaggcattccgctcgtcgaga
aatatcaataagccggaatggatgattatgaaagtaatccccgtgattcctcccgatttg
aggcctttggtgcctttggacggagggcgtttcgccacttccgacttgaacgatttgtat
cgccgtgtgattatccggaacaaccggttgaaacgattgatggacatcaaagcgcccgat
gtgattttgcgtaatgaaaaacgcatgttgcaggaagcggtcgactcgttgttcgacaac
tcgcgtaaatcgagtgcgattaaaaccgaatcgaaccgtccgttaaaatcactttcggac
agcttgaagggaaaacagggacgtttccgtcaaaacctgttgggtaagcgtgtcgactat
tcggcgcgttcggtaatcgttgtcggtcccgaattgaaaatgaacgaatgcggcttgccg
aaagatatggcagccgaactatacaaacccttcatcatccgtaaactgatagagcggggg
attgtgaaaacggtgaaatcggcaaagaaaattgtcgaccgtaaagaacccgtcgtttac
gacatcctcgaatatgtgatgaaagggcatcctgttatgctgaaccgtgccccgacattg
caccggctcggtatccaggctttccaaccgaaactaatcgaaggaaaagccattcagttg
cacccgttggcttgtacggctttcaatgccgacttcgacggcgaccagatggccgttcac
ttgccgttgggcaatgaagccattttggaagcgcaattgctgatgctggggtcgcataac
attctgaatccggctaacggcgctcctattaccgttccttcgcaggatatggtgctcgga
ctgtattacattaccaaaatacgtccccatgccaagggcgaaggcctgattttctacggc
gaagaagaagccattatcgcttaccaggaagggaaggtcgatatccatgcgccggtgaaa
gtcattgtcgacgatatcgacgaggaaggtaatccgatccgcaaaatgcacgatacatcg
gtagggcgggttatcaccaatgagtatattccgaaagaagtaggatatatcaatgaactg
ctctctaaaaaatcgcttcgtgatatcatcggaaaggtgatcaagacctgcggggttgcc
cgcacggcacagtatctggatgatattaaagccctcggatataaaatggctttcaagggc
ggattgtcgttcaacctcgaagatgtgattatcccgaaagaaaaagagacattgatcaag
caggggtatgacgaagtagagcagatcatggagaactataatatgggtttcattacctat
aacgagcgctacaatcagattatcgatacatggacgcatatcaactccaagttgtcgaat
atcctgatgaaacaattggccgaagacgaccagggtttcaactccgtgtatatgatgctc
gactcgggcgcccgtggttcgcgcgaacagatccgtcagttgtcgggtatgcgtggattg
atggcgaagccgcaaaagagcggcgccgaaggcggacagattatcgagaacccgattttg
tcgaactttaaggaaggcttgtcggtgttggagtacttcatctcgacgcacggcgcccgt
aagggacttgccgataccgccttgaagacggccgatgcgggttacctcacgcgtcgtctg
gtagacgtgtcgcaggatgtgattatcaccgaagaagattgcggtacgttgcgcggattg
gtcgctacggctattaagaagaatgatgaagtgattgcttccctttacgaacgtattttg
ggccgtgtttcggttcacgacgttcagcatccgacaaccggcgaaatactggtgcagtcg
ggagaagaaataacggaagaaatcgcccggaaaatagaagagtcacccatcgaacgggtc
gaaatacgctcggtgcttacgtgcgaatcgcatcatggcgtgtgtgcaaaatgttacgga
cgtaacctggtcaccggacggttggtacagaagggcgaagccgttggcgttgttgccgcc
cagtctatcggtgagccgggtacgcagttgacgctccgtacgttccacgtaggaggtatt
gcttcgaatatcgcggccgagagtcagattgccgccaaatacgatggtattctgcaattc
gacgagttgcgtgtggtcgatgtaaaagatgccgaaggcaagccctacaaagtggtggtg
agccgtttggtggaaatgcgtattgtcgatccgaataccaagattgtgttgttgacgcac
aacgtgccttacggttcgaaactctatttcggcgaaggcgataaggtgcaaaagggcgaa
ttgatttgcgaatgggatccgtttaacgcggtgattatttcggaggcgaccggtacgatt
aagttcgaaagctttaccgaagggggaacctataaagtggaatcggatgagcaaaccgga
ttgaaagaaaaggttatcatcgagtcgcgcgacaaaaccaaagctccatcggctcatatc
gttaacgaagacggagatattctgcgcacgtatacattaccgttgggcgcgcacatcgtc
aggaatgaaaacgatacgattaaagcgggtgacgtcttagtgaaaattcctcgcgcggtg
ggtaaagccggcgatatcacgggaggtctgcctcgcgttaccgagcttttcgaagcgcgt
aacccttcgaatccggccgttgttgccgaaatcgacggagaggtttctttcggtaaaatc
aaacggggtaaccaggaaattatgatcacttccaaaataggggaagtgaaaaaatatctt
gttccgctgtccaagcagatattggtgcaggaaaacgactttatccgagcaggaatgccg
ttgtccgacggagccattactccggccgacattctcgctatcatggggccgacggctgta
caggaatacattgtgaacgaagtacaggatgtgtaccgtctgcaaggagtgaagatcaac
gataagcacttcgaggtgattgttcgccagatgatgcgtaaagtggaagtgatcgatccg
ggagacacccgcttcctcgaacagcaattggtcgacaaactggatattatggaagagaac
gaccgcatttggggcaagaaggtcattatggatgccggcgattcgcaggtattcgaaccg
ggacagattgttaccgtgcgcaaattgcgtgacgagaacagttcgctgaaacggcgcgac
ctgaaactggtggaagcacgcgatgcggttcccgctacggccaaccagattttgcaaggg
attacccgtgccgctcttcaaacgaccagttttatgtcggctgcttctttccaggaaacg
acgaaggtattgaacgatgccgccatcaatggcaaagtcgatctgctggaagggttgaaa
gagaatgtgatttgcggacatttgattcctgccggtaccggtcagcgcgatttcgacaaa
ttgattgtcgggccgcgtgaggagttcgaaaagttgaaatcgaataaacgttccaacctg
tttcaggaagtagaagaagagtaa
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