Limibacterium fermenti: ABNK31_08110
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Entry
ABNK31_08110 CDS
T10860
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
lfg Limibacterium fermenti
Pathway
lfg02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
lfg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ABNK31_08110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfg03021
]
ABNK31_08110
Transcription machinery [BR:
lfg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABNK31_08110
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_r2
Sigma70_ECF
GerE
HTH_23
HTH_11
HTH_Mga
PhyR_sigma-like
HTH_Tnp_ISL3
HTH_40
HTH_24
HTH_38
HTH_28
HTH_36
HTH_AsnC-type
PCI
NUMOD1
HTH_29
DUF2774
Lipocalin_2
Motif
Other DBs
NCBI-ProteinID:
XGS84857
UniProt:
A0ACH2UHJ2
LinkDB
All DBs
Position
complement(1795271..1795867)
Genome browser
AA seq
198 aa
AA seq
DB search
MVLNKADYKKLSDSELWQLCRENDMRSYDELFSRYYPRMLRHASRYIKDTMQAEELCMDM
MFNLWVKREELTINDDLSNYLFCAVRNSVISHLRKEIPATLGLEEVKEESQVSRPSDYWL
LSEEVEQVYNAALKKLSPRRRQVFMLSRYEHLSYSEIARKLNLSENTIQNYMVAALDGLR
SNMKEYLPMAFILLLFVF
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atggttttaaataaagcggattataaaaaattgtcagacagtgaattgtggcaactctgc
cgcgaaaacgacatgcggtcttacgacgaactgttcagccgctattatccgcgcatgctc
cgccacgcctcgcgctatatcaaagataccatgcaagccgaagagttgtgcatggatatg
atgttcaacctctgggtaaagcgtgaagaactaaccatcaacgacgacctgtccaactac
ctgttctgtgccgtccgtaactcggtcatttcccacctgcgtaaagaaatccccgccact
cttggtctggaggaagtaaaagaggaatcccaggtcagcaggccaagcgactattggctg
ttgtccgaagaagttgaacaagtgtacaacgccgcactgaaaaaattaagtccccgccgc
cgtcaggtatttatgctgagccgctatgaacacctcagctactccgaaatcgcccggaag
ttaaatctttcggagaacaccatccagaactacatggtcgccgcgttggacggcctgcgt
tccaatatgaaagaatacctcccgatggcattcattcttcttctattcgttttttga
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