KEGG   Limibacterium fermenti: ABNK31_08960
Entry
ABNK31_08960      CDS       T10860                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
lfg  Limibacterium fermenti
Pathway
lfg02020  Two-component system
Brite
KEGG Orthology (KO) [BR:lfg00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    ABNK31_08960
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lfg03021]
    ABNK31_08960
Transcription machinery [BR:lfg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     ABNK31_08960
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 GerE HTH_40 HTH_10 PI3Ka Sigma70_ECF HTH_23 HTH_11 HTH_29
Other DBs
NCBI-ProteinID: XGS85018
UniProt: A0ACH2UJE4
LinkDB
Position
2016233..2016775
AA seq 180 aa
MDNNDVFTTQFKAFYIQHAKELIFFARKFVDHDTAEDIVHTVFLKIWDKRSTVVAEKGIK
TYLLSMVQNACYDYLKRQIVEDNYLARAAREIKLDELNYYMSSKEDSENDKIETLYAAIE
QLPEKCKEIFKKAYLDEQPHADIAKEMGISVRTVETHVYKALKFLREKLISTPSNDSRSS
NT seq 543 nt   +upstreamnt  +downstreamnt
atggataataacgatgttttcacgacgcaattcaaagcattttatatacaacatgccaaa
gaattgatctttttcgcccgtaaatttgtcgatcacgacacggcggaagatattgtccat
actgtttttttaaagatttgggacaagagatcgacggtggttgccgaaaagggaataaaa
acgtatctcctttctatggtgcaaaatgcgtgttatgattacctgaaacgacaaatcgta
gaagacaactatctcgcccgggcggcacgggaaattaagttagacgaactgaattattat
atgtcttcaaaagaagactccgagaatgacaaaatagaaactctctacgcagcgatcgag
caattgcctgaaaaatgtaaagaaatcttcaagaaagcctatctcgatgaacaaccgcat
gccgacatcgccaaagaaatggggatatcggttagaacggtagaaacccatgtatataag
gcgctcaagtttcttcgggaaaagttaatctccaccccgtctaacgattcccggtcatct
tga

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