Limibacterium fermenti: ABNK31_08960
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Entry
ABNK31_08960 CDS
T10860
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
lfg Limibacterium fermenti
Pathway
lfg02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
lfg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
ABNK31_08960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfg03021
]
ABNK31_08960
Transcription machinery [BR:
lfg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABNK31_08960
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
GerE
HTH_40
HTH_10
PI3Ka
Sigma70_ECF
HTH_23
HTH_11
HTH_29
Motif
Other DBs
NCBI-ProteinID:
XGS85018
UniProt:
A0ACH2UJE4
LinkDB
All DBs
Position
2016233..2016775
Genome browser
AA seq
180 aa
AA seq
DB search
MDNNDVFTTQFKAFYIQHAKELIFFARKFVDHDTAEDIVHTVFLKIWDKRSTVVAEKGIK
TYLLSMVQNACYDYLKRQIVEDNYLARAAREIKLDELNYYMSSKEDSENDKIETLYAAIE
QLPEKCKEIFKKAYLDEQPHADIAKEMGISVRTVETHVYKALKFLREKLISTPSNDSRSS
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
atggataataacgatgttttcacgacgcaattcaaagcattttatatacaacatgccaaa
gaattgatctttttcgcccgtaaatttgtcgatcacgacacggcggaagatattgtccat
actgtttttttaaagatttgggacaagagatcgacggtggttgccgaaaagggaataaaa
acgtatctcctttctatggtgcaaaatgcgtgttatgattacctgaaacgacaaatcgta
gaagacaactatctcgcccgggcggcacgggaaattaagttagacgaactgaattattat
atgtcttcaaaagaagactccgagaatgacaaaatagaaactctctacgcagcgatcgag
caattgcctgaaaaatgtaaagaaatcttcaagaaagcctatctcgatgaacaaccgcat
gccgacatcgccaaagaaatggggatatcggttagaacggtagaaacccatgtatataag
gcgctcaagtttcttcgggaaaagttaatctccaccccgtctaacgattcccggtcatct
tga
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