Limibacterium fermenti: ABNK31_10770
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Entry
ABNK31_10770 CDS
T10860
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lfg Limibacterium fermenti
Pathway
lfg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABNK31_10770 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfg03019
]
ABNK31_10770 (rny)
Messenger RNA biogenesis [BR:
lfg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABNK31_10770 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH-I_KHDC4-BBP
DsrD
V_ATPase_I
Motif
Other DBs
NCBI-ProteinID:
XGS85110
LinkDB
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Position
2419576..2421111
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AA seq
511 aa
AA seq
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MNMEIVIGIISLLIGGGIAWYVSGKMANSRAQKMLSDAEKDGDVIKKKKLLEAKEEILAM
KSETEKQIANRTAKIQNVETRLKQRELSLNQKQEELNKKYTELEEIKVNLSSQQEILEKN
NAEAERLHRQSVEKLETISGLSADDAKERLVESLKEEAKTEAQSYINDIMEEARMTANKE
AKRIVVQSIQRVATETSIENSITVFHIDSDEVKGRIIGREGRNIRALEAATGVEIVVDDT
PEAIVLSGFDPVRREIARLSLHQLVTDGRIHPARIEEVVAKVKKQIEEEIVEIGKRTVID
LGVHGLHPELIRLVGKMKYRSSYGQNLLQHSRETANLCAIMAAELGLNPKKAKRAGLLHD
IGKVPDDEPELPHALLGMKLAEKYKEKPDICNAIGAHHDEVEMTTLLSPIVQVCDAISGA
RPGARREIVEAYIKRLNDLEKLALSYPGVVKTYAIQAGRELRVIVGADKIDDQDTEKLSS
EIARKIQTEMTYPGQVKITVIRETRAVSFAK
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atcaatatggaaatagtaataggtattataagcttactcataggcggcggaattgcttgg
tatgtgagcgggaaaatggctaattcgcgcgcccaaaaaatgttgagtgatgcggaaaaa
gatggggacgtcattaaaaagaagaaacttctggaagcgaaggaggaaattctcgccatg
aaaagcgagactgaaaagcaaatagccaaccggaccgctaaaatacaaaatgtagaaacc
cgtcttaaacaacgcgaactatctctcaatcaaaagcaggaagagctgaataaaaagtat
accgaactcgaggagataaaagtcaatttaagttcccaacaagagatattggaaaagaat
aatgcggaagccgaacgccttcatcgtcaatcagtggaaaaactggaaaccatttccggc
ctatcggctgatgatgcaaaagaacggctggtagaatcgttgaaagaagaagcgaaaacc
gaggctcaatcgtatattaacgacatcatggaggaagcccggatgacggctaataaagaa
gccaagcgcatcgttgtacaaagcatacagcgtgttgcgaccgaaacctctatcgaaaac
tccatcacggtattccacatcgattccgacgaagtgaaggggcgcattatcggccgcgaa
ggacgcaatatccgggcattggaagccgctacgggagtcgagattgtcgttgacgacacc
cctgaagcgatcgtcctttcaggttttgacccggtgcgccgcgaaatcgcccggttgtcg
ctgcatcaactcgtaaccgacgggcgtatccatccggcccgaatcgaagaagtggtggcc
aaagtgaaaaaacaaatcgaagaagaaatcgtcgaaatcggcaaacgcaccgtcatcgac
ttaggcgtccatggcttgcatcccgagttgattcggctcgtcggaaaaatgaaataccgt
tcttcttacggacaaaacttattgcagcactcccgcgaaacggctaatctatgcgccatc
atggccgccgaattgggactgaatcccaaaaaagccaaacgtgccggattgctccacgac
atcgggaaagtgcccgatgatgagcccgaattgccgcatgcgctcctaggtatgaagtta
gcggaaaaatataaagagaagccggacatttgcaatgcgatcggcgcgcatcacgatgaa
gtggaaatgacgacgctcctctcccccatcgttcaggtttgcgatgccatttcaggagct
cgaccgggtgctcgtcgcgaaatcgtcgaagcctatatcaagcgcttgaacgatttggaa
aagctcgctctatcctaccccggcgttgtcaaaacgtatgccatccaggcaggacgtgag
ttgcgggtcattgtcggcgccgacaaaatagacgatcaggacacggaaaaactatcctcc
gagattgcccgtaaaatacaaacggaaatgacttatcccggccaggtaaagattactgtg
atccgggaaacccgagccgttagttttgcgaagtaa
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