Limibacterium fermenti: ABNK31_16105
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Entry
ABNK31_16105 CDS
T10860
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lfg Limibacterium fermenti
Pathway
lfg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABNK31_16105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfg03019
]
ABNK31_16105
03400 DNA repair and recombination proteins [BR:
lfg03400
]
ABNK31_16105
Enzymes [BR:
lfg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABNK31_16105
Messenger RNA biogenesis [BR:
lfg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABNK31_16105
DNA repair and recombination proteins [BR:
lfg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ABNK31_16105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_C_2
Cas3-like_C_2
Lectin_C
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
XGS83046
LinkDB
All DBs
Position
3729479..3731398
Genome browser
AA seq
639 aa
AA seq
DB search
MQSELFHEILKKYWGYSSFRPLQEEIIQSVWEGKDTLGLMPTGGGKSLTFQVPVMAMDGI
CLVVTPLIALMKDQVDTLREKGIKAAAVYSGMPRSEIIGTLENCIFGDFKFLYVSPERLS
SDIFITKLQAMKVCLLVVDESHCISQWGYDFRPSYLKIAELRTLFPDVPVLALTATATQT
VVKDIQEKLNFKEKNVFRKSFERKNLSYVVRVAEDKIGELIHILQSVPGTAIVYVRSRQE
TKAVAKALQQAAIPADHFHAGLSHEEKNHKQNEWKKGKSRVMVATNAFGMGIDKADVRVV
VHLDLPNSLEEYYQEAGRAGRDGDRAYAIILYAKADSVKLKKRITDAFPKKELIIRAYEA
LGNYLQVAVGSGYNRVFDFDLQEFCQRFKLPFLQTHHALKILELAGYVEYTEEIDMHSRV
RFLIMRDELYTIHLEAEVDDLVHTLLRSYTGVFSDDVYIDESFLAIQTGLSRRKVCEILV
HLGRMRYIRYIPQKKTPFIIFTSPREDTPFISIPKIVYEDRKKRFEKRIHSMIDYVETDD
ICRSRMLLSYFDEKDPQDCGFCDVCLKRNETGLSNFEFKQIRNALQVQLKKYPSMRLQEL
VDSIDAENSKKIIKTLRFLIDLGEFSLKDDIISFSNEKD
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcggaattgtttcacgaaatactgaaaaaatattgggggtatagctcctttcgg
ccgcttcaggaagaaatcattcaatcggtatgggaggggaaagataccctcgggctcatg
cccaccggcggaggaaagtctttgacttttcaagtgccggtgatggctatggacggtatt
tgcctcgtggtgacaccgctcattgcgttgatgaaagatcaggtcgacactctccgggaa
aagggcattaaggccgcagcggtatactcgggaatgcctcggagcgaaatcatcgggaca
ttagaaaattgtattttcggggatttcaaattcttatatgtttcccccgaaaggctttct
tccgatatattcattacgaagcttcaagcaatgaaagtctgcctgctggtggtagacgag
tcgcactgtatttctcaatggggatacgactttcgcccttcgtatttgaaaattgccgaa
ctgcgcacattgtttcccgacgttcccgttctggctctgacagccaccgccacccaaacc
gtcgtgaaagatatccaggaaaagctgaacttcaaggaaaaaaacgtcttccggaaaagt
ttcgaacggaaaaacctctcttatgtcgtccgcgtagcggaggataaaatcggcgaactc
atccacatcctccagtcggttcccggcacagccatcgtttacgtacggagccggcaagag
acgaaggcggtcgccaaagccttgcaacaagccgccattccggccgatcatttccacgcc
ggcttgtcgcacgaggaaaaaaatcataagcaaaacgaatggaagaagggcaaaagccgg
gtaatggtcgcgaccaacgcctttggcatgggcatcgacaaggccgacgtgcgagtcgtc
gtgcatctcgatctgcctaactcgctcgaggaatattatcaggaggcggggcgcgccggg
cgcgacggagaccgggcttatgccatcatcctctacgcaaaagccgatagcgtaaaacta
aaaaagcgcatcaccgacgcctttcccaaaaaagagcttattatacgggcatacgaagcg
cttggtaactatctccaggtagccgtggggtcgggatataaccgtgttttcgatttcgat
ctgcaagagttttgccaacgtttcaaacttccgttccttcaaacacaccacgccctgaaa
atactcgaacttgcgggatatgttgagtataccgaagaaatcgatatgcactcgcgtgta
cggtttttgattatgagagacgagctatatacgatccacctcgaggcggaggttgacgat
ctcgttcacacgctgctgcgaagttacaccggcgttttttccgatgatgtgtacatcgac
gaatcttttctggctatccagacaggtctgtcgcgccgtaaagtatgcgaaatattagtc
catttaggaagaatgcgctacatccgctatattcctcaaaagaaaacaccctttattatt
ttcacgtcgccgcgggaagacactcctttcatctccattccgaagattgtttacgaagat
cggaaaaaacggtttgaaaaacgcattcattccatgatcgactatgtggaaacagacgat
atatgccgcagccggatgttattaagctatttcgatgaaaaggacccgcaagattgcggc
ttttgcgatgtgtgtctgaagagaaatgaaacgggactatcgaattttgaattcaagcag
atccgtaacgcgttacaggtgcaattgaaaaaatatccatccatgcgattacaggaatta
gtcgattccatagacgcggaaaacagcaagaagatcatcaaaacgctccggttcttgatc
gatctcggggaattctccctaaaagacgatatcatttctttttccaacgaaaaagattaa
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