Limibacterium fermenti: ABNK31_16335
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Entry
ABNK31_16335 CDS
T10860
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lfg Limibacterium fermenti
Pathway
lfg03030
DNA replication
lfg03430
Mismatch repair
lfg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lfg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABNK31_16335 (dnaE)
03430 Mismatch repair
ABNK31_16335 (dnaE)
03440 Homologous recombination
ABNK31_16335 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lfg03032
]
ABNK31_16335 (dnaE)
03400 DNA repair and recombination proteins [BR:
lfg03400
]
ABNK31_16335 (dnaE)
Enzymes [BR:
lfg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABNK31_16335 (dnaE)
DNA replication proteins [BR:
lfg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABNK31_16335 (dnaE)
DNA repair and recombination proteins [BR:
lfg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABNK31_16335 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF6282
Motif
Other DBs
NCBI-ProteinID:
XGS83091
LinkDB
All DBs
Position
3786339..3790082
Genome browser
AA seq
1247 aa
AA seq
DB search
MQPFVHLHVHSQYSLLDGQASIQRLVDKAMKDGMKALALTDHGAMYGIKEFVNYVSKKNA
PVNAEIKNLRKEIDSLKEKGASPEQISERQDTLVQTQKKLFKPIIGCECYVARRNRFMQS
EKIDGSGWHLVVLAKNLQGYKNLIKIVSKSWTEGFYYRPRIDKELLEQFHEGLIISSACL
GGEISRKIDAGQIDEAEKAVQWFKGIFGDDYYIELQRHKTDRPDADQTTYPKQEKVNIEL
LRIAEKYQIKAIASNDVHFVNEEDADAHDRLICLSTGKDFDDPNRMRYTKQEWLKTTQEM
NAIFPDHPQILSNTLEVADKVEFYSIDSPPMMPFYPIDDSFGTEEGYKAKYPEEELKKEF
GENIFHRLGGYNKVVRIKLEADYLTHLTLQGARKRYGENMSDDIKERLDFELNTIKNMGF
PGYFLIVQDFINAARGMDVAVGPGRGSAAGSAVAYCLGITDIDPLKYDLLFERFLNPDRI
SMPDIDIDFDDEGRGRVLRWVIDKYGSEKVANIITYGTMATKSAIRDVARVHKLPLSESD
RLAKLVPDRIPNVKKITLGEAIKYVPELNEAANSSDPLIKNTLKYARMLEGNVRSTGVHA
CGVIIGQTDISNVVPISTAEDKETKEKLLVTQYEGSVIEETGLIKMDFLGLKTLSIIKDA
VKNIQATTGKKIDMSAIPMDDTKTYQLYSDGKTTGTFQFESAGMQKYLKELQPTKFEDLI
AMNALYRPGPMDYIPSFIARKHGREEISYDIPVMEKYLSETYGITVYQEQVMLLSRLLAN
FTRGQSDELRKAMGKKLIDKMNSLKEKFLAGGKQNGYQEKVLDKIWHDWEKFASYAFNKS
HATCYSWVAYQTAWLKANYPSEYMASVLSNNLNNITEITKFMDECKAMGISVLSPDVNES
FTNFSVNKKGDIRFGLGAIKNVRQGAIADIVEERTKNGAFNDIFDFVERVNLFSCNKKTI
EALALAGAFDSFSGVRREHFLAQNSKGEDFIDTLIRYGSKYQQDKNEAVNSLFGDDTSFQ
IARPEVPKTDRWSDLEKLNKERELIGIYLSAHPLDDYEFILNYICTADTLKLNDLESLNG
KDITFGGIITAVREGQTKRGSPYTIFKIEDYQGSFEMPLFGEESVNFGRYARVGLSVYLT
ARVQPKRYRPEELEVKIASIQLLSDVKDKLVSKITLQIPLSEINDATVNELSALIKNNSG
NSLLYFQIIGEDSKMSVQLFSRVTRIQVDKRLIDYLKNNLFIDFRIN
NT seq
3744 nt
NT seq
+upstream
nt +downstream
nt
atgcaaccattcgtacacttacacgttcactctcaatattccctgctcgacggccaggcc
agcattcagcggctggtggacaaagccatgaaagacggcatgaaagccttagcgctgacc
gatcacggggccatgtacggcataaaagagttcgtcaactacgtgtcgaaaaaaaatgct
ccggtcaatgcggaaatcaaaaatttaagaaaagaaatcgactcgctgaaagaaaagggc
gcatcgcccgagcaaatcagtgaacggcaagataccctcgtccaaacgcaaaagaaactc
tttaagccgatcatcggatgcgaatgttatgtagcccgccgcaaccgctttatgcaatcg
gaaaaaatagacggcagcggctggcacttggtcgtattggcgaaaaacctgcaaggatac
aaaaacctgattaaaatcgtttcgaaaagttggacggaaggtttttactaccgcccgcgt
atcgacaaggagttactggagcaatttcacgagggattgattatttcatcggcgtgcctc
ggtggggaaatatcgcgcaaaatagatgccggacaaatcgatgaagccgaaaaagccgtg
caatggttcaagggtattttcggcgacgattattacatcgaactgcaacggcataaaacc
gatcgcccggatgccgaccaaacgacgtatcccaagcaggaaaaggtcaatatagaattg
ctgcgcatcgccgaaaaatatcaaataaaagcgattgccagcaacgacgtccactttgta
aacgaggaagatgccgatgcgcacgaccgcctcatctgcctgagcacgggaaaggatttc
gacgatcccaaccggatgcgatacaccaaacaggaatggcttaagactacgcaggaaatg
aacgccattttcccggatcatccccaaatactctccaacacgttggaagttgccgacaaa
gtggagttctattccatcgacagccccccgatgatgcctttttatcccatcgacgattca
ttcggaacggaagaaggctataaggccaaatatccggaagaagagctgaaaaaggaattc
ggagaaaacattttccatcgcctcggcggatataataaggtggtccgtatcaaactcgag
gccgactacctgacgcatttaaccctgcaaggcgcccggaagcggtacggcgaaaacatg
tcggacgacatcaaagagcgcttggattttgaattgaacacgatcaagaacatggggttc
cccggatatttcctcatcgttcaagactttatcaacgccgcccgaggaatggacgtggcg
gttggcccggggcgcggatcggccgcaggatcggcggtggcttactgcctggggatcacc
gacatcgatccgctgaaatatgacttgctgttcgagcggttcctcaaccccgaccgtata
tccatgcccgatatcgacatcgacttcgacgacgaaggccgcggccgcgtgcttcggtgg
gtgatcgataaatacggaagcgaaaaagtggccaatatcattacctacggcacgatggcg
acgaaatcagctattcgcgatgtggcgcgcgtccacaagttgccgctctccgaatcggac
cggctggccaaactcgttcccgaccggattcccaatgtgaaaaagattacgctgggcgaa
gccatcaaatatgttcccgaactcaatgaagcggccaacagcagcgatccgctgataaaa
aacacgctcaaatacgcgcggatgctcgaaggaaacgtccgcagcacgggcgtgcatgcc
tgcggggtgattatcggccaaaccgacatctcgaatgtggtgcctatcagtaccgcggag
gataaagagacgaaagagaaacttttggttacccaatatgaaggctcggtgattgaagag
acggggcttatcaaaatggacttcctcgggctcaaaaccttgtcgattatcaaagacgcg
gttaagaacattcaggcgaccacgggcaaaaagatcgatatgagcgccatccctatggac
gacaccaaaacctatcaactatatagtgacggaaagaccaccggcacgttccagtttgaa
tcggcggggatgcaaaagtatctgaaagaattgcagcctacgaagttcgaagatttaatt
gcgatgaacgcgctctaccgaccgggcccgatggactacattccttctttcatcgcccgt
aagcacggcagggaagaaatctcttacgacatccccgtcatggagaaatacctcagcgag
acgtacggcattaccgtgtaccaggaacaggtgatgcttctgtcgagattgttggcgaat
ttcacccgggggcagtcggacgagttgcgtaaagccatgggaaagaaactcatcgacaag
atgaattccttgaaggagaagttcctcgcgggaggaaaacaaaacggatatcaggaaaag
gttttggataagatctggcacgactgggagaagttcgcttcgtatgcctttaacaagtcg
catgccacctgctattcatgggtcgcctatcaaaccgcctggctgaaggccaactatccg
tcggaatacatggcttcggtgctttccaacaacctgaacaacatcacggagatcaccaaa
ttcatggacgaatgcaaagccatggggatcagtgtgctctctcccgatgtaaacgagtcg
tttacgaacttctcggtcaacaaaaagggggatatccgctttgggttgggggctatcaag
aacgtcaggcagggcgccatcgccgacatagtggaggagcgtaccaaaaacggggcgttt
aatgatattttcgactttgtggaaagggtcaaccttttctcctgtaataagaaaacgatc
gaggccttggctttagccggagcattcgactccttttccggagtcagaagagaacatttt
ctggcgcagaacagcaagggcgaagattttatcgataccctcatccggtacgggagtaaa
tatcaacaggataaaaatgaagcggtcaattccttgttcggcgacgacacatctttccaa
atcgcccgtcccgaagtgcctaagaccgaccgctggtccgatctcgagaaattaaacaaa
gagcgcgagcttatcggcatttacttatcggcgcatccgttggatgattatgaatttatc
ctgaactatatctgtaccgccgacacgttgaagttgaatgacttggaatcgttaaacgga
aaggatatcaccttcggcggaatcattacggccgtgcgggaaggtcaaacgaagcgggga
tcgccttacacgatttttaaaattgaagattatcagggaagtttcgaaatgccgcttttc
ggcgaggagagtgtgaatttcggccgctatgccagagttggcttgtcggtttacctcacc
gcaagagtgcaaccgaagcgttatcgtccggaggaactggaagtgaagatcgcgtccatt
caacttctgtctgacgtaaaggacaaactggtttcgaaaatcaccttacaaattcccctt
agcgaaataaacgatgcgacggtgaacgaattatcggcgcttataaaaaacaattcggga
aattcattgttatatttccagattataggcgaagattcaaaaatgagcgtccaacttttt
tcacgggttacccgcattcaagtagacaaacggcttattgattatctgaagaataattta
tttatagactttaggattaactaa
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integrated database retrieval system
