Lysobacter firmicutimachus: ABU614_03330
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Entry
ABU614_03330 CDS
T11708
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lfh Lysobacter firmicutimachus
Brite
KEGG Orthology (KO) [BR:
lfh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lfh03016
]
ABU614_03330
Enzymes [BR:
lfh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ABU614_03330
Transfer RNA biogenesis [BR:
lfh03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ABU614_03330
Prokaryotic type
tRNA splicing ligases
ABU614_03330
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
XCO75838
UniProt:
A0AAU8MW54
LinkDB
All DBs
Position
766685..767905
Genome browser
AA seq
406 aa
AA seq
DB search
MSTSSYELLHAEEGSVPVKGWVRGVTVDEGARRQLRNIAALPHVGPWIAVMPDAHLGKGA
TVGSVVPTRGAIIPAAVGVDLGCGMAAVRTTLRAQDLPDSLAKLRSAIEHCIPVGNGRGG
EHRRLPDSHATRLAKSGLAARLDAIHAKHRKLRTDKLDKQIGTLGGGNHFIEICLDEAGA
VWVMLHSGSRGTGNLIGSYFIELARLKLERRVLGFHLPDKDLAFLLEGEPLFEDYVEAVG
WAQDYARHNREAMMERVLHAMRVQLPKFQLEKTAVNCHHNYVQREEHFGESLWVTRKGAV
SAREGELGIIPGSMGARSYIVRGKGNADSFHSYSHGAGRLMSRAEARRKITLKDHRAATA
HVECRKDAAVIDESPAAYKPIEAVMAAQSDLVEVVHTLRQVVCIKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgagtacatcaagctacgaactgctgcacgccgaagagggctcggtcccggtcaagggc
tgggtacgcggggtgacggtcgacgaaggagcgcggcgccagttgcgcaacatcgccgcc
ctgccccacgtcgggccctggatcgcggtaatgccggacgcccacctgggcaagggggcg
accgtgggctcggtggtgccgacccgcggcgcgatcatcccggccgcggtcggcgtcgac
ctgggctgcggcatggccgcggtgcgcacgaccctgcgcgcccaggatctgcccgacagt
ctggccaagctgcgctcggcgatcgagcactgcatcccggtcggcaacggccgcggcggc
gaacaccgtcgtttgcccgacagccatgccacccgcctggccaaatccgggctggcggcg
cggctggatgcgatccacgccaaacaccgcaagctgcgcaccgacaagctggacaagcag
atcggcaccctcggcggcggcaaccacttcatcgagatctgtctcgacgaggccggcgcg
gtgtgggtgatgctgcactcggggtcgcgcggcaccggcaacttgatcggcagctacttc
atcgagctggcgcgattgaagctggaacggcgcgtgctcggcttccatctgccggacaag
gacctggccttcctgctcgaaggcgagccgttgttcgaggactacgtcgaagccgtcggc
tgggcgcaggactacgctcgccacaaccgcgaggcgatgatggaacgagtgctgcacgcg
atgcgggtccagctgccgaagttccagttggaaaagaccgcggtcaattgccaccacaac
tatgtccagcgcgaggagcacttcggcgagtcgttgtgggtgacccgcaagggcgcggtc
agcgcccgtgagggggaactcggcatcatccccggcagcatgggcgcgcgcagctacatc
gtgcgcggcaagggcaacgcggacagcttccacagctacagccacggcgccggccgactg
atgagccgtgccgaagcgcggcggaagatcactctcaaagaccatcgtgcggccacggcc
cacgtggaatgccgcaaggacgcggcggtcatcgacgagtcgccggcggcgtacaagccg
atcgaagcggtgatggcggcgcagtccgatctggtcgaggtggtccacaccttgcgccag
gtggtctgcatcaagggttga
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