Lysobacter firmicutimachus: ABU614_08025
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Entry
ABU614_08025 CDS
T11708
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
lfh Lysobacter firmicutimachus
Pathway
lfh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABU614_08025 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfh03021
]
ABU614_08025 (rho)
03019 Messenger RNA biogenesis [BR:
lfh03019
]
ABU614_08025 (rho)
Transcription machinery [BR:
lfh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ABU614_08025 (rho)
Messenger RNA biogenesis [BR:
lfh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ABU614_08025 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
Spore_III_AA
AAA
AAA_22
OB_RNB
S1CSD-TOTE-2
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
XCO76717
LinkDB
All DBs
Position
complement(1842234..1843949)
Genome browser
AA seq
571 aa
AA seq
DB search
MSDKTPDAGDTAEKRVRKPRASKAAEAAPAVVGDASPLIPAPAPVEAAPPKPAPAPSASE
SAPAAASGAESAAPQQGNEGGGNPQSQQAQGQREGGFDNNRGNRRDRFRNRRDRDRDRNN
RPQQRGGGDDYADNGENFVPRPHPQVPEGFPQYSLGDLKRMPAPRLLEIAEQLSITDGVA
RARKQDVIFALLKVLTRHGEGVAADGVLEILPDGFGFLRAAEASYLAGPDDTYISPSQIR
RFNLRTGDHLSGRIRFPKDGERYFALSVVDSINGEPLEASKNKVLFENLTPLFPRRKFKL
ERGDGSTEDITGRILDLMAPQGKGQRALIVSPPKAGKTMLMQQVATAITHNHPDVHLIVL
LVDERPEEVTEMQRTVRGEVVSSTFDEPAARHVQVAEMVIERAKRLVEHKKDVVILLDSI
TRLARAYNNVVPSSGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKM
DEVIYEEFKGTGNSEVHLDRRIAEKRVYPAININRSGTRREDLLIEPELLQKIWILRKLL
HGMDEIGAMEFLLDKMKNTKSNDEFFSSMKR
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
ttgtccgataagacccccgacgctggcgataccgccgaaaagcgcgtgcgcaagccgcgc
gccagcaaagccgccgaagccgctccggccgtggtcggcgacgccagccctctgattccc
gcgcccgctcccgtcgaagcggcgcctcccaagcccgccccggcccccagcgccagcgag
tccgcaccggccgccgcttccggcgccgagagcgccgcgccgcagcagggcaacgaaggc
ggcggcaacccgcaatcgcagcaggcccagggccagcgcgaaggcggcttcgacaacaac
cgcggcaaccgccgcgaccgcttccgcaaccgccgcgaccgcgaccgcgatcgcaacaac
cgcccgcagcagcgcggcggcggcgacgactacgccgacaacggcgagaacttcgttccg
cgtccgcacccgcaggtgccggagggcttcccgcagtattcgctgggcgacctcaagcgc
atgcccgcgccgcgcctgctggagatcgccgaacagctgagcatcaccgacggcgtcgcc
cgcgcccgcaagcaggacgtgatcttcgccctgctcaaggtgctgacccgccacggcgaa
ggcgtcgccgccgacggcgtgctggagatcctgcccgacggcttcggcttcctgcgcgcg
gccgaggccagctatctggccggcccggacgacacctatatctcgcccagccagatccgc
cgcttcaacctgcgcaccggcgaccacttgtccggccgcatccgcttccccaaggacggc
gaacgctatttcgccctctcggtggtcgacagcatcaacggcgaaccgctggaagcgtcg
aagaacaaggtcctgttcgaaaacctgaccccgctgttcccgcgccgcaagttcaagctc
gagcgcggcgatggctcgaccgaagacatcaccggccgcatcctcgacctgatggcgccg
cagggcaagggccagcgcgccctgatcgtctcgccgcccaaggccggcaagaccatgctg
atgcagcaggtcgcgaccgcgatcacccataaccaccccgacgtgcacctgatcgtgctg
ctggtcgacgagcgtccggaagaagtgaccgaaatgcagcgcaccgtgcgcggcgaagtg
gtctcctcgaccttcgacgaaccggccgcgcgccacgtgcaggtcgcggaaatggtgatc
gagcgcgccaagcgcctggtcgaacacaagaaggacgtggtgatcctgctcgactcgatc
acccgcctggcccgcgcctacaacaacgtggtgccgtcctcgggcaaggtgctcaccggc
ggcgtcgacgccaacgccctgcaccgcccgaagcgtttcttcggcgccgcgcgcaacgtg
gaagaaggcggctcgctgaccatcatcgccaccgcgctgatcgacaccggcagcaagatg
gacgaggtgatctacgaagagttcaagggcaccggcaacagcgaagtgcacctggaccgc
cgcatcgccgaaaagcgcgtctacccggcgatcaacatcaaccgctcgggcacccgccgc
gaagacctgttgatcgagccggagctgctgcagaagatctggatcctgcgcaagctgctg
cacggcatggacgaaatcggcgcgatggagttcctgctcgacaagatgaagaacaccaag
tccaacgacgagttcttcagctcgatgaagcgctga
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