Lysobacter firmicutimachus: ABU614_12820
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Entry
ABU614_12820 CDS
T11708
Name
(GenBank) AlkA N-terminal domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
lfh Lysobacter firmicutimachus
Pathway
lfh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lfh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ABU614_12820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lfh03000
]
ABU614_12820
03400 DNA repair and recombination proteins [BR:
lfh03400
]
ABU614_12820
Enzymes [BR:
lfh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
ABU614_12820
Transcription factors [BR:
lfh03000
]
Prokaryotic type
Helix-turn-helix
AraC family
ABU614_12820
DNA repair and recombination proteins [BR:
lfh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
ABU614_12820
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
ArfC
Motif
Other DBs
NCBI-ProteinID:
XCO73280
UniProt:
A0AAU8MLB4
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All DBs
Position
complement(2956436..2958043)
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AA seq
535 aa
AA seq
DB search
MDATPTPAPAASLPHWRVCEQARLSRDPRFDGLFFTAVTSTRIYCRPVCPAPAARRENVV
YFGHAAAAEAAGFRPCLRCRPELSPGEGAWRRGDAAVARALKLIDQGLLAEQPLAELAAR
VGVGERQLRRLFVDRLGAPPIGVHGTRRLLFAKQLLTETRLPITEVAMAAGFGSLRRFNA
TFQEAYRMAPRELRRRPNESVDTGGGETLSLRLGYRPPYDFAAMLDFLRGRALPGVELVD
EHSYSRVIGPIEAPGWLRVSAWPSRRGEAEHALRLELHGPAPARLLDITNRLRRMFDLDA
DPNAIGAALSVDPRLKALVDRRPGLRLPSGWDGFEIAVRAILGQQVSVAAARTLASRLAQ
RYGQPLPKPFAPGLEHLFPTADALADADLVSIGLTRARADTVRTVARALLDGRVDFRAER
TLDDFVARWVALPGIGPWTAHYIALRALGHPDAFPADDLVLQKAVPEDGVRLSAKALNAR
AEAWRPWRAYAVIQVWRDSMPVPAAKPAAAATAAPKRRRVAGGRAETARNEGAAA
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggacgccacccccactcccgcgccggccgcttccctgccgcattggcgcgtctgcgaa
caagcccggctgagccgagatccgcgtttcgacggcctgttcttcaccgccgtcaccagc
acccgcatctattgccggccggtgtgtccggcgcccgcggccaggcgcgagaacgtggtc
tatttcggccacgccgcggcggccgaggccgccggcttccgcccttgtctgcgttgtcgg
ccggaattgtcgcccggcgaaggcgcgtggcggcgcggcgacgccgccgtcgcacgcgcg
ctgaagctgatcgatcaaggcctgctggccgaacagccgttggccgaattggccgcgcgc
gtcggcgtgggcgagcggcaattacgccggctgttcgtcgaccgcctcggcgcgccgccg
atcggcgtgcacggcacccgtcggctgctgttcgccaagcaattgctgaccgagacgcgc
ctgccgatcaccgaagtcgcgatggccgccggcttcggcagcctgcgccgcttcaatgcg
actttccaggaggcctatcggatggcgccgcgcgagttgcgccggcggccgaacgaaagc
gtcgacaccggcggcggcgaaaccttgagtctgcgcttgggttatcggccgccgtacgac
ttcgcggcgatgctcgatttcctgcgcggccgcgccctgcccggagtcgagctggtcgac
gagcacagctacagccgggtgatcggcccgatcgaagcgccgggctggctgcgggtcagc
gcatggccgtcgcgcaggggcgaggccgaacacgcactgcgcctggaactgcatgggccg
gcaccggcgcggctgctggacatcaccaatcgcttgcggcggatgttcgatctggacgcc
gacccgaacgcgatcggcgccgccttgtcggtcgacccgcgcctgaaggccttggtcgac
cgccggccgggcctgcgcctgcccagcggttgggacggcttcgagatcgcggtgcgcgcg
atcctgggccagcaggtcagcgtcgccgccgcgcgcaccctggcctcgcgtctggcgcag
cgctacggccagccgctgccgaagccgtttgcgccgggactggagcatctgttcccgact
gcggacgccttggccgacgccgacctggtttcgatcggcctgacccgcgcccgcgccgac
accgtgcgcacggtcgcccgcgccctgctcgacggccgggtcgacttccgcgccgaacgc
acgctcgacgatttcgtcgcacgctgggtcgccctgccgggcatcggcccgtggaccgcg
cactacatcgccctgcgcgcgctcggccatcccgacgcttttcccgccgacgacctggtg
ctgcagaaggcggtgccggaagacggcgtgcgcctcagcgccaaagcgctcaacgcccgc
gccgaagcctggcggccgtggcgcgcctacgccgtgatccaggtctggcgcgacagcatg
ccggtaccggcggccaagcccgccgcggcggcgaccgcggcccccaagcgccgccgggtc
gccggcggccgcgccgaaaccgcgcgcaacgaaggcgcggcggcatga
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