Lysobacter firmicutimachus: ABU614_20255
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Entry
ABU614_20255 CDS
T11708
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lfh Lysobacter firmicutimachus
Pathway
lfh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABU614_20255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfh03019
]
ABU614_20255
03009 Ribosome biogenesis [BR:
lfh03009
]
ABU614_20255
Enzymes [BR:
lfh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABU614_20255
Messenger RNA biogenesis [BR:
lfh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABU614_20255
Ribosome biogenesis [BR:
lfh03009
]
Prokaryotic type
rRNA helicases
ABU614_20255
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
HEM4
P-loop_SecA
UvrA_inter
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
XCO74677
UniProt:
A0AAU8MQV4
LinkDB
All DBs
Position
4640584..4642626
Genome browser
AA seq
680 aa
AA seq
DB search
MSADTPNTAPETPKFTDLALPETLLRALADVGYESPSPIQAATIPPLLEGRDVLGQAQTG
TGKTAAFALPILAAIDPAQARPQALVLAPTRELAIQVAEAFQKYATHLPGFHVLPIYGGQ
SYYPQLQALKRGVQVVVGTPGRVIDHLERGSLDLSQLRCLVLDEADEMLRMGFIDDVEAV
LKKTPETRQVALFSATMPPQIKRIAQTYLKEPVEVAIKAKTTTSANIRQRYWSVSGVHKL
DALTRILEAETFDAMIVFSRTKLGTEELAEKLSARGISAAAINGDVQQAQREKTIQNLKD
GKIDVLVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRKGEAILFVTPRE
RGMLRAIERATRQPIEPMELPSVETVNEQRVSRFLGRISEALESQELGLFRDLVERYERE
KNVPAVEIAAALAKLVQGENPLLLAPPPAQPRYAEREGPREHRGQATRKFIERDNASNAG
AHRRDKFERPARDEARPSRHDEERGGHRHEQRQYTPPMPGASSERPLNAAESMFDDDAPA
PRHERAPERSHERAPREAEVGMETFRIEVGHAHGVHPGNIVGAIANEADLESRYIGRIDI
RDEYTLVDLPEGMPRELMEHLKKVRVAGQPLRIQRAGPGDAEGGRGRARPGAFRPHGARP
GGPKPHGAGPRKPFKPRGPR
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgacacgcccaataccgcccccgaaacgcccaaattcaccgacctcgccctg
ccggagacgctgctgcgcgcgctcgccgacgtcggctacgagtcgccttcgccgatccag
gccgccaccattccgccgctgctggaaggccgcgacgtgctcggccaggcccagaccggc
accggcaagaccgccgcgttcgcgctgccgatcctggccgcgatcgacccggcccaggcc
cgcccgcaggcgctggtgctggcgccgacccgcgagctggcgatccaggtcgccgaggcg
ttccagaagtacgccacccacctgcccggtttccacgtgctgccgatctacggcggccag
agctattacccgcagctgcaagcgctcaagcgcggcgtgcaggtcgtggtcggcaccccc
ggccgggtgatcgaccatctcgagcgcggctcgctggacctgtcgcagctgcgctgcctg
gtcctggacgaagccgacgagatgctgcgcatgggcttcatcgacgatgtcgaggcggtg
ctgaagaagaccccggaaacgcgccaggtggcgctgttctcggcgaccatgccgccgcag
atcaagcgcatcgcccagacttatctcaaggaaccggtcgaagtcgcgatcaaggccaag
accaccacctcggccaacatccgccagcgctactggtcggtcagcggcgtgcacaagctc
gacgcgctgacccgcatcctcgaagccgaaaccttcgacgcgatgatcgtgttctcgcgc
accaagctgggcaccgaggagctggccgagaagctgtcggcgcgcggcatctcggccgcg
gcgatcaacggcgacgtgcagcaggcgcagcgcgagaagaccattcagaacctcaaggac
ggcaagatcgacgtcctggtcgccaccgacgtggccgcgcgcggcctggacgtggagcgg
atcagccacgtgctgaactacgacattccctacgacaccgaaagctacgtccaccgcatc
ggtcgcaccggccgcgccgggcgcaagggcgaggcgatcctcttcgtgaccccgcgcgag
cgcggcatgctgcgcgcgatcgagcgcgccacccgccagccgatcgagccgatggagctg
ccgagcgtggagacggtcaacgagcagcgcgtctcgcgcttcctcggccgcatcagcgag
gcgctggaaagccaggagctgggcctgttccgcgatctggtcgagcgctacgagcgcgag
aagaacgtgcccgcggtggagatcgccgcggccctggccaagctggtccagggcgagaac
ccgctgttgctggccccgccgccggcgcagccgcgctacgccgaacgcgaggggccgcgc
gaacaccgcggccaggcgacgcgcaagttcatcgagcgcgacaacgcgtccaacgccggc
gcgcatcgccgcgacaagttcgagcgcccggcgcgcgacgaagcccgtccgtcccgtcac
gacgaggagcgcggcgggcatcgccacgagcagcgccagtacaccccgccgatgccgggc
gcatcgtccgagcgcccgctcaacgccgccgagtcgatgttcgacgacgacgcgccggcg
ccgcgccacgagcgcgcgcccgagcgcagccacgagcgcgcgccgcgcgaggccgaggtc
ggcatggagaccttccggatcgaagtcggccacgcccacggcgtgcatcccggcaacatc
gtcggcgcgatcgccaacgaagccgacctggagagccgctacatcggccgcatcgacatc
cgcgacgagtacaccctggtcgacctgcccgagggcatgccgcgcgagctgatggagcac
ctgaagaaggtgcgcgtcgccggtcagccgctgcgcatccagcgcgccggcccgggcgac
gccgaaggcggccgcggccgcgctcgccccggcgcgttccgcccgcacggcgcgcgtccg
ggcggtcccaagccgcacggcgccggcccgcgcaagccgttcaagccgcgcggtccgcgc
tga
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