Leptospirillum ferriphilum ML-04: LFML04_0148
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Entry
LFML04_0148 CDS
T02319
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lfi
Leptospirillum ferriphilum ML-04
Pathway
lfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LFML04_0148
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfi03019
]
LFML04_0148
03016 Transfer RNA biogenesis [BR:
lfi03016
]
LFML04_0148
Enzymes [BR:
lfi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LFML04_0148
Messenger RNA biogenesis [BR:
lfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LFML04_0148
Transfer RNA biogenesis [BR:
lfi03016
]
Prokaryotic type
tRNA degradation factors
LFML04_0148
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AFS52400
UniProt:
J9Z7A5
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All DBs
Position
145837..148071
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AA seq
744 aa
AA seq
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MTKDKSDEHPLTPEERILAFLREEAQKPVRSDRLVEAVLRKKKERSDVSRALDRLVAEKQ
VILLKGGYAGLPDKLHFREGMFLSHPDGYGFVVTEGQREDLYVPPGATKGAMHQDKVLSV
HLGTDHRGRSEGQVVEIISRSRSSVVGVLHELKGGYFLSPRDPKIPHEFLVVDNGAEKLQ
EGELAVLDILRYPEPGHIPEGKISRFLGDPSDPSVDTDLVIATHHLSISFPDRVEAEAKR
MAREVAVEPSENRVDLRHLEIMTIDGDRARDFDDALSVVENPDGTFQIGIHIADVGAYVL
PGSELDKEAFRRGTSVYFPDRVVPMFPEVLSNGVLSLNPDEDRLARTVMVRMSPAGQVLE
SSIFRSVIRSRLRATYSRVHPILAGESTDSPESKFSVQLRSLWKLAKNLREERFQNGSLD
FDLPEPEIVLDLRGEPVDIIRSPRYLSHFLVEEFMLLANRIVAAELTRKFSMAMYRVHET
PSPEKTESLGIFLGALGISIPKRKEGKMKASDLSAVLESTRGTPLEKMVHFSVLRSLKQA
RYDVYPLGHFGLAMDDYTHFTSPIRRYPDLIVHRLLDLPEGRPSGEGSFYPLEQVAVQAS
ERERASVEAERMAVDLKKIRFMGQHIGKKFSGSVSGVTGFGFFVELSDVLVEGLVPFSAL
NDDYYVYDEKHHLLRGETTRKTYRIGDRLEVVVVRVDNERLRIEFALDQEGRPESLQKVR
KKRKGKKNRSQRAGKSRKKGSAKG
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
gtgacaaaagacaagtcagacgagcatccgttgactcccgaagagagaatcctggccttc
ttgcgggaagaagcccagaagcctgtccggagcgacaggctcgtcgaagccgttctgaga
aagaagaaggaaagaagtgacgtatccagagcgctcgaccgtcttgtggcggaaaagcag
gtcattttgctgaaggggggatatgcaggacttccggacaaacttcattttcgggaagga
atgtttttatctcaccccgacggctatggctttgtcgtgactgaaggacagagggaggat
ctctatgttcccccgggggcaacaaaaggagccatgcaccaggacaaggtcctgtccgtt
catctggggacggatcaccggggtcgttcagagggacaggtcgttgaaatcatctcgcgg
tcgcgttcctctgtcgtgggtgtcctgcacgagctgaaaggcggatactttttgtctccc
cgcgatccaaaaattccccatgaatttcttgttgtggacaacggcgcggaaaaattgcaa
gagggagagctcgcggttctcgatattcttcgttaccccgagcccggtcatattccagaa
ggaaagatttcccgatttctgggagatccgtccgatccgtccgttgacacggatcttgtg
atcgcaacgcaccacctgtccatctcctttcccgatcgcgtcgaggcagaggcaaaacgc
atggcgagggaagtcgcggttgaaccttcagaaaatcgggtagatcttcgacatctcgaa
atcatgacgatcgacggcgacagggcacgcgattttgacgatgctctatccgtcgtggag
aatccggacgggactttccagatcggcatccatatcgcggatgtgggggcgtatgttctc
ccggggtccgaactcgacaaggaggctttccggagagggacgagtgtctatttcccggac
cgtgtggttccgatgttcccggaggttctctccaatggggttctttccctgaacccggac
gaagatcgtctggcacggacggtgatggtccggatgagtccggccggtcaggttctggaa
agctccatttttcgttcggtgatccggagccggctccgggcaacatactcccgggtccac
cccatactggcaggagagtccacggattccccggaatcaaagttttctgtccaactccgt
tctctctggaagctcgcgaagaacctccgggaggaacgatttcagaacgggagtctggat
ttcgatctgccggaaccggaaattgttctggatctgcggggtgagcctgtcgatatcatc
cgttctccacgatacctgtcccattttctggtcgaggagttcatgcttttggcgaacagg
atcgtggccgcagagctgaccagaaaattttcgatggcgatgtatcgtgtccacgaaaca
ccttctccggaaaaaaccgaatctctgggcatttttctgggagccctgggaatttccatt
cccaagcgcaaagaaggaaagatgaaggccagcgacctttccgctgtcctggaatcgacg
cggggaacaccgttggaaaaaatggtgcacttttcggttttgcgctcactgaaacaggcg
cgttacgacgtgtatcccctggggcattttggtctggcgatggacgattacacccacttt
acctcaccgattcggcgatatccggatctgattgttcaccgccttctggatcttccggag
ggacgtccttccggggaaggttccttttacccgctggaacaggtggctgtccaggcctct
gagcgggaaagggcatctgtcgaggccgaacggatggctgttgacctcaagaaaatccgg
ttcatgggacagcatatcgggaagaagttctctggttcggtttcgggggtcaccgggttc
ggattttttgttgagctttccgatgttttggtggaggggctggttcctttttcggccctc
aatgacgactattatgtctatgatgaaaaacaccaccttttaagaggggaaacaacccga
aagacctaccggatcggggacaggcttgaagttgtggttgtccgggtcgataacgagcgc
ttgcgcatcgaatttgcgctggatcaggaggggcgcccggagtctttgcagaaggtccgg
aaaaaaagaaaaggcaaaaagaatcggagccaacgggccggaaagtccagaaagaaagga
tctgctaaggggtaa
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