Leptospirillum ferriphilum ML-04: LFML04_0917
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Entry
LFML04_0917 CDS
T02319
Name
(GenBank) putative HD superfamily hydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lfi
Leptospirillum ferriphilum ML-04
Pathway
lfi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LFML04_0917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfi03019
]
LFML04_0917
Messenger RNA biogenesis [BR:
lfi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LFML04_0917
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Ortholog
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GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
Asp_Glu_race
KH_2
YpjP
Motif
Other DBs
NCBI-ProteinID:
AFS53149
UniProt:
J9Z9G8
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Position
856492..858057
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AA seq
521 aa
AA seq
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MVTAIMILGAALLGGIAGVWTGFFWANARSSGQVRENRKTAAEVLEEAARIKEARIKEAE
LEAREAAFRIRVSAEEEVARKKQESSRRDQEVSIREAECAHEKQKLEQSRQELSRKMEEI
RSREKQLEARESEIAHSLSLQHQKMEEISGLSLEEARDRLLKEAEELIRSDAARLAQKVE
REFRENAVRKAREVMTLAIQRYANDHVAETSISVVPIQSEDVKGRIIGREGRNIRAFQQA
TGVDLIIDDTPDAIIISGFDPHRREVARLALEKLLQDGRVHPARIEEVVEKIRRELDQTL
QEEAEKVAFDLGISDIHPEILKLVGRLKFRTSYGQNNLLHAREVAYLCSMMASELGLNPK
LAKRAGFLHDIGKSLTHEGEGSHPLLGAEAAKKYGESPEVINAIQSHHGDVEPICLESIL
VAASDAISAARPGARRESMDAYLKRLEKLEGIANSFKGVEKSYAIQAGREIRIIVRQDEV
SDEDLAVVSREIAKKIEAELKYPGQIKVTVIRENRIVEYAR
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggtcacggccattatgattttgggggcagcccttcttggagggattgcaggcgtctgg
acaggttttttttgggcgaatgcccgttcgagtggacaagttcgggaaaaccgaaaaacg
gcggcggaagttctggaagaagcggcccgcatcaaggaagccaggatcaaggaagcggaa
ctcgaagcccgggaagcggcttttcgtattcgtgtttcggccgaagaagaagtggcccgg
aaaaaacaggagtcctcccggcgcgaccaggaagtttcaatccgggaagcggaatgcgct
cacgaaaagcagaaactcgagcaatctcggcaggaactctcccggaaaatggaagagatc
cgctcccgggaaaagcagctggaggcccgtgagagtgaaattgcacattccctctccctt
cagcatcaaaaaatggaagagatctcagggttgtccctggaggaagcccgggatcgcctc
ctgaaagaggccgaagagctgattcgctcggatgcggcccgactcgcccaaaaagtcgag
agggaattccgtgagaacgcagtccgcaaggcgcgggaggtcatgacccttgcaatccag
agatatgcgaacgaccatgtggcggaaaccagcatatcggttgttcccatccagtcggag
gatgtcaagggaagaattatcggaagggaaggccgaaacatccgggccttccagcaggcg
actggcgtggatctcatcattgacgacacgccggatgcgattatcatctccggatttgat
ccccaccgaagggaagtggcccgccttgcacttgaaaaacttcttcaggacggtcgggtg
catcccgcccgcatcgaagaagttgtcgaaaagattcgccgggaattggatcagacttta
caggaagaggcggagaaggttgcttttgaccttggaatttccgatatccacccggaaatc
ctgaagctggtcggccggttgaaattccggaccagctatggacagaacaatttgcttcac
gcacgggaagtcgcctacctgtgctcgatgatggcatcggaacttggcctgaacccgaag
cttgcgaaaagagccggtttcttgcatgacattggaaaatccctgacgcacgaaggggag
gggtcacaccctcttctgggagcggaagcggcaaaaaaatatggcgaatccccggaagtg
atcaacgccatccagtctcatcatggagacgtggagccgatttgtcttgagtcgattctg
gttgcggcttccgatgctatttctgctgcccgtccaggagcgagaagagaaagcatggac
gcatatctgaaaaggcttgaaaaactggagggaattgcgaattcattcaagggtgtcgaa
aagtcctacgccatccaggcgggccgcgaaatccggattattgtccgtcaggatgaagtc
agcgatgaagaccttgcagtcgtttcccgggagatagcaaaaaaaatcgaggccgaactc
aaataccccggacagataaaggtcacggttatcagggagaaccggattgttgaatacgct
cgctga
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