Leptospirillum ferriphilum ML-04: LFML04_1179
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Entry
LFML04_1179 CDS
T02319
Name
(GenBank) single-stranded DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lfi
Leptospirillum ferriphilum ML-04
Pathway
lfi03410
Base excision repair
lfi03430
Mismatch repair
lfi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LFML04_1179
03430 Mismatch repair
LFML04_1179
03440 Homologous recombination
LFML04_1179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfi03400
]
LFML04_1179
DNA repair and recombination proteins [BR:
lfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LFML04_1179
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LFML04_1179
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LFML04_1179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHHA1
RecJ_OB
DHH
Motif
Other DBs
NCBI-ProteinID:
AFS53406
UniProt:
J9ZB85
LinkDB
All DBs
Position
1117775..1119424
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AA seq
549 aa
AA seq
DB search
MDIEYESRKSKPGWLLPSVMDSDVSDLAKEIGLDPIWARFLLGRGFHWDSLDEFFFHPQP
PGEESVGDIRLAQNILGDALDERAPIAIYADLDVDGITSAVMCSRFLSRRQHPHRVLLVR
REEGHGVNPDRILSLPQEGFRVLIVADLGVSNLPLLQEAGRRGLASIVVDHHLLQEPWPN
DMAIVHPQGRSHLTAVGCLYVLLRSLVKHPEEREMAFLAGLAVLSDRAPILHENRYFVQA
LLDREILEAFPGVRALLRKRVHRKIMINDYSFWVIPSLNAPGRMSDPLPAFHLLMARTSS
EAERYSIQVMEMNRRRREAEWSIYEEARRQWDGTPVLFAPDWAPGVMGRIAHRLSEEFDQ
SVFVATLSPNGGVRGSLRLRGGITLSDILKELEGLPISGGGHPKAGGLGFPVELLETVRK
VLGNILKEPSPCPEVQDSSSLEIDAFLPASYRSPSFWEGLGKLVPFGEGFPEPLFGIRNV
QIERMESTNSRLVLCHFRWSHGTEKAAFRQTSNLPKPGDRVDLVMTPELVGKGDHVERHF
SIRRYRSAG
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggatatcgaatacgaaagtcggaagtcgaagcctggatggcttctcccttccgtcatg
gattcggatgtttccgatctggcaaaggaaattggcctggatccgatctgggctcgcttt
ttgctgggccgggggtttcactgggattctctggatgagttttttttccatccgcagcca
ccgggggaggaatcggtgggggatatccgtcttgcccagaacatccttggagatgcgctg
gatgagcgagcccctattgcgatttatgcggatctcgatgtcgatggtattacttcggcc
gtcatgtgttcacgattcctgtcccggagacagcacccccatcgtgtgctgctcgttcgg
cgggaggaaggccatggtgtcaatcccgaccgcattctctctctcccgcaggaaggcttc
agagtcctgatcgttgccgatctcggagtctcgaatcttcctctccttcaggaagccggc
cgaagaggccttgcttctatcgttgtggatcaccatcttctgcaggaaccctggccgaat
gacatggcaatcgtccacccccagggcagatcccacctgacagctgtcggttgcctctat
gtgcttctccggtcactggtcaaacatccggaagaacgggagatggcgtttttggccggc
ctggcggttctttcggacagagctcccatcctccacgaaaaccggtatttcgtccaggct
ctgcttgaccgtgaaatcctggaggcctttccgggggttcgggccttgctccggaaacgg
gtccaccgcaagatcatgatcaacgattattccttctgggtgattccctccctgaatgct
cccggtcggatgtccgatcctttgccggcatttcatctgctgatggcccggacatcctct
gaagccgaacggtattccattcaggtcatggaaatgaaccgccggagaagagaggccgag
tggagcatctacgaggaagcccgcagacaatgggatgggacccctgttctctttgctccg
gactgggctcccggcgtcatgggccggatcgcccaccggttgagtgaagaatttgatcag
tccgtctttgttgccacgctgagccccaatggaggagttcgtggttccctgcgtctcagg
ggaggaatcacattgtccgacattctgaaggagctagagggtctcccgatctccgggggg
ggacatccgaaggccggcgggctcgggtttccggtcgaacttctggaaacggtccgaaag
gtgctcggaaatattctgaaggaaccctctccctgtccggaagttcaggattcctcctcg
ctggaaatcgacgcctttcttcctgcctcctaccggtcgccttccttctgggaaggcctg
ggaaagcttgttccgttcggcgagggatttccggagccgctttttggcatccggaacgtt
cagatcgagcggatggagtcgacgaacagccgtcttgtcctctgccatttccgctggagc
cacggaaccgaaaaggcagccttcagacagacctcaaatctgcccaagccgggagacagg
gtggacctcgtcatgacaccggaacttgtcggaaagggagatcacgttgagcggcatttc
tccatccgtcgctaccgatccgcaggatag
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