Leptospirillum ferriphilum ML-04: LFML04_1359
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Entry
LFML04_1359 CDS
T02319
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lfi
Leptospirillum ferriphilum ML-04
Pathway
lfi03030
DNA replication
lfi03430
Mismatch repair
lfi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LFML04_1359 (dnaE)
03430 Mismatch repair
LFML04_1359 (dnaE)
03440 Homologous recombination
LFML04_1359 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lfi03032
]
LFML04_1359 (dnaE)
03400 DNA repair and recombination proteins [BR:
lfi03400
]
LFML04_1359 (dnaE)
Enzymes [BR:
lfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LFML04_1359 (dnaE)
DNA replication proteins [BR:
lfi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LFML04_1359 (dnaE)
DNA repair and recombination proteins [BR:
lfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LFML04_1359 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HROB
DUF655
Motif
Other DBs
NCBI-ProteinID:
AFS53583
UniProt:
J9ZCJ2
LinkDB
All DBs
Position
complement(1284795..1288400)
Genome browser
AA seq
1201 aa
AA seq
DB search
MSSTDQFVHLHVHTQYSLLDGANKIDPLIRKARAENMPAIAMTDHGNLFGAIEFFQTAKK
HGVKPIIGCEVYITPRSRFDRQDLYFGGDGPHQAKKINNASFHLILLAENDTGYRNLLKI
VSLSHLEGFYYRPRIDLELLSRHHEGLIALSGCLKGQISYMLTRGDTDRAYATAGLFREI
FGPENYFFEVQANGLEDQRIANREIIGLSKKLSIPLVATNDCHYLEREDSVPHDILLCLQ
TGKTLEDPARLRFGSDEFYLKTPREMVRSFEELPEAIENTLRIADRIDVSIDLQTTHMPS
YRLDENQGQTTTVPELFVRTSREGLDARFQENTFSDTEKALYLERLEREIQVIQKMGYEG
YFLIVWDFIRKAREMGIPVGPGRGSAAGSVVAWSLRITNIDPIRFGLLFERFLNPERVSL
PDIDVDFCMNRRGEVIQYVVDRYGMDRVAMIATFGTMGAKGSIRDVGRVLGMTYAEVDRV
AKMIPNSLDMTLEKALEENPDLRALLEKDPRMEELFSLSRKLEGITRHSSIHAAGVVISR
EPLLEHVPLMRGANGEIVTQFTKDDVEKVGLVKFDFLGLTTLTLIQGAENRIQAHTPDFS
ADRIPLDDARTYRLLSEGKTLGIFQLESRGMTDLIMKMQPETFEDLIALLALYRPGPINS
GMVDDFIKRKKNPREIRYELPELEPVLRETYGVIVYQEQVMQIANVLAGFSLGEADLLRR
AMGKKKPEEMAKMQDKFVDGAIRKGFPKEKATHVFELMAYFAGYGFNKSHSAAYALISYQ
TAYLKAHYPLELWAALLTNALDDTEKIGVFLAGAKDMGIEVLAPDINQSEFDFAILPGSR
ILFGLGAVKNVGKQAVDCILEARANDGPFVDFPDFLKRIVGKKVNRRVIEALIRAGAFRS
LGIRRSVAMESLDDLLAWAEKQKSGKGSLQKSLFSEDQGGRSSGPPLREVPEWDERMLLR
EEKNALGFYLTSHPMARYADLLLKLDTRSTRSLESVSEGETVRVFAVVSALREVKTKKGD
KMAQLTLLDMEGTIEAVLFPDVYAQVQEKLQTDLPILVTGPLERNDFGSKIRVTRVETIG
QALETLYQTVVVRLQTDGLSVKDLEDLKQILLGYPGPVPAVLELKVMTRPYPVAVIGLHL
NVSPSDELVHALSGRFGEQAVVRKEELDPDLRTYLVALKQRGGVRQERRGKEFPRETSLA
G
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaccgaccagttcgtccatctgcatgtccatacccagtacagcctcctggac
ggagccaacaagatcgatcccctgatccggaaagcccgggccgaaaacatgccggccatc
gccatgaccgaccacgggaaccttttcggggccatcgagttctttcagacggccaaaaaa
catggtgtaaaaccgatcatcgggtgcgaagtctatatcactccccgctcccgcttcgac
cgtcaggatctctatttcggcggagacggaccgcaccaggcaaaaaaaatcaacaacgcc
tccttccatttgatactgctggccgaaaacgataccggataccgtaaccttctcaagatc
gtctccctttcgcatctggaggggttctactatcgtccgcgtattgatctggagcttctc
tcccggcatcacgaaggcctgatcgctctctccggctgtctgaagggtcagatttcgtac
atgttgacgcggggtgatacggaccgcgcgtatgcgacggccggactcttccgggagatt
ttcggtccggagaattatttttttgaagttcaggccaacggactggaagaccagcgcatt
gcgaaccgggaaatcatcggtctgtcgaagaagctttcaatcccgctcgtggcaaccaac
gattgccactatcttgagcgcgaggattccgttccccatgacatccttctgtgcctccag
acaggaaagactctggaggaccccgcccgtctccgtttcggctccgacgagttctacctg
aaaaccccccgggagatggtccggtccttcgaagaactgcccgaagcaatcgaaaacact
ctgcggatagccgaccggatcgatgtgtccatcgaccttcagacaactcacatgccgtcc
tatcgtctcgatgagaaccagggacagaccacgaccgtccctgagcttttcgtccggacc
agccgggagggtctcgacgcccgttttcaggaaaatactttttccgatacggagaaagcg
ctctatctcgagcgtctggaacgggaaatccaggtgattcagaaaatggggtatgaaggg
tacttcctgatcgtctgggactttatccggaaggcccgggaaatggggattccggttgga
cccggacgaggatccgccgcaggctctgtcgtcgcctggtcgcttcggatcaccaatatt
gatccgatccgttttggactcctgttcgagaggtttctgaatcccgagcgggtcagcctc
ccggatatcgatgtcgacttctgtatgaatcgccggggagaggtgatccagtatgtggtc
gaccgatacgggatggaccgggtcgccatgatcgcgacgttcggaacgatgggcgccaag
gggtcgatccgcgacgtcggccgggtgctcggaatgacctacgccgaagtggaccgggtg
gcgaaaatgatcccgaacagcctcgacatgacacttgagaaagccctcgaagaaaacccc
gatctccgggcactgctggaaaaagatccccggatggaagagctcttctccctttcgcga
aaactcgaggggatcacccgtcatagctcgattcatgccgccggggtcgtgatttcgcga
gaacctctcctggaacacgttccgctcatgagaggggcgaacggggaaatcgtgacccag
ttcacgaaggacgatgtcgaaaaagtgggtctggtcaagtttgacttcctggggttgacc
accctgaccctgatccagggagccgaaaaccggatccaggcccatacaccggacttttcg
gccgaccggatccctctcgacgatgccaggacctaccgccttttatccgaaggcaaaacc
ctcggaatcttccagctggaatcccggggaatgacggacctgatcatgaagatgcagccc
gagaccttcgaggacctgatcgccctcctcgctctttaccgtccgggcccgatcaacagt
ggcatggtggacgactttatcaaaaggaagaagaaccctcgggaaatccgctacgagctt
cccgaactcgaacctgttctccgggaaacctacggcgtgatcgtctatcaggaacaggtg
atgcagattgccaacgtcctggccggtttttctcttggcgaagccgatcttctccggcgg
gccatgggcaagaagaagccggaagagatggccaagatgcaggacaagttcgtcgatggc
gcaatccggaaaggctttccgaaagaaaaggccacccatgtctttgaactgatggcctat
tttgccggatacggattcaataaatcccacagcgcagcgtatgcgctgatctcctatcag
accgcctacctgaaagcccattatccgctggagctctgggcagccctgctgacgaacgcc
ctggatgatacggagaaaatcggggtgtttcttgccggggccaaggacatgggcatcgaa
gttctggctccggacattaaccagagcgaattcgattttgcgattcttccgggttcccgc
atcctgtttggtctcggtgcggtcaaaaatgtcgggaaacaggcggtcgactgcattctg
gaagcgcgggcgaacgacggaccctttgtcgactttccggattttttgaagcgcatcgtc
ggaaagaaggtgaaccgccgggtgattgaagctctgatccgcgcgggggcgtttcgttca
ctgggcatccggcggtcggtggcgatggaatccctggacgatctcctggcctgggccgaa
aaacagaaatccggaaaagggtctttgcaaaagtcccttttctccgaagaccagggtggc
cggtcctccggtcctcccctccgggaggtgccggaatgggacgagcggatgctgttgcgg
gaggaaaagaatgcgctggggttttatctgacgtctcatccgatggcccgctatgccgat
ctcctcctgaagctcgatacgcgatccacgcgaagtctcgaatccgtatcagagggggaa
accgtgagggttttcgccgtcgtgtcggccttgcgggaagtcaagacgaaaaaaggcgac
aaaatggcccagttgacccttctggacatggagggaaccatcgaggcagttctttttccc
gacgtttacgcccaggttcaggagaaactccagaccgaccttccgattctggtgacggga
cctctcgagaggaacgactttgggagcaagattcgggtcacccgcgtcgaaaccattgga
caggcccttgagacgctttatcagacggttgtcgtccgactccagaccgacgggctttcc
gtcaaggacctcgaagatctcaaacaaattctgcttggatatccaggacctgtccccgcc
gtcctggagctcaaggtcatgacccgcccctatccggtggccgtcatcggtctgcacctc
aatgtttccccctccgacgagcttgttcatgccctgagcgggcggttcggggaacaggcg
gtcgtccggaaggaggaactggatccggacctccggacctatctcgtcgcattgaagcag
agggggggagtccgacaggaaagacgcgggaaagaattcccgagagagacttctctcgcc
ggatag
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