Leptospirillum ferriphilum ML-04: LFML04_1360
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Entry
LFML04_1360 CDS
T02319
Name
(GenBank) uvrD/rep helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lfi
Leptospirillum ferriphilum ML-04
Pathway
lfi03420
Nucleotide excision repair
lfi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LFML04_1360
03430 Mismatch repair
LFML04_1360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfi03400
]
LFML04_1360
Enzymes [BR:
lfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LFML04_1360
DNA repair and recombination proteins [BR:
lfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LFML04_1360
MMR (mismatch excision repair)
Other MMR factors
LFML04_1360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AFS53584
UniProt:
J9ZAS1
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Position
complement(1288452..1290401)
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AA seq
649 aa
AA seq
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MDSRILNVLNEEQREAVTAPDGPALVLAGAGSGKTRVLTHRVAWLLEKGVPAHRMLVLTF
TKKAARVLQHRLADLLTGPQVLLWAGTFHHVGYRLLREFGSRIGYAGTPVVIDREDQVDL
LKSILSAFPEGLRKELPPAGQILNAISLSRNSMVSLEDVIYDRFSGLIPVIETVTRIRTE
YEEVKRKDRLADFDDLLTGWLDILESGPDVLELLQERFRFLLVDEYQDTNPLQSTILDKL
AARHKSFFVVGDDSQSIYSFRGAHVENILTFPDRYPEARIYRLETNYRSSPPILDLANRI
ILGNERRIEKTLRPFHTEEGEAPRTVGLYSDADQAHFIGSTVDQLLDGGTQASEIAILYR
SHYLSLPIQFELARRKIPFSITSGLRFYEQAHIKDVLAHLRLLLNPRDTLAMTRLLRMIP
RMGERSSEKLIRVLGEVEDVFSGLTDEKVLKTAPSLSREGVRKLGERLFSLRELQRKEES
TVGLLVMEILEEGYRRDLYDIREDPEEREADLVAFAEQLGEQKDLEGFLGEITLLENLEE
MALSNASVPDRVILSSIHQAKGLEWDTVFVLSMNEGVFPPEKSALRPQDLEEERRLFYVA
VTRARRDLLLCVPESAISRGRGERLYPSRFLSEIGSDLVSETRYESWSF
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
ttggattccagaatcctgaacgtcttgaatgaggaacagagggaggcggtgactgccccg
gatggtcctgcactggtgctagccggagccggttccggcaagacgcgtgtgctgacgcat
cgggtggcctggcttctggagaaaggagtgcccgcccaccggatgcttgttctgacgttc
acgaagaaggctgcccgtgtgctccagcatcgtctggcggatcttctgaccgggccgcag
gtccttttgtgggccgggacattccaccatgtcggatatcgcctcctgcgggagttcgga
tcccgcatcggctatgcgggaacgccggttgtcattgaccgggaggatcaagtcgatctt
ctcaagtcgattctttccgcgtttcccgaagggctccgaaaagaacttcctcccgccgga
cagatcctgaacgccatcagtctgtccagaaacagtatggtttctctggaggatgtcatc
tatgaccggttttcgggactgattcccgtgatcgagacagtgacccggatcaggaccgaa
tacgaggaagtgaaaagaaaagaccggctcgcggattttgacgatcttttgaccggctgg
ctggacattctggaatccggaccggatgtgctcgagcttctccaggaacgtttccggttt
cttctggtcgacgaataccaggacacgaatccccttcagtcgacgattctcgacaagctg
gcggccagacacaaaagttttttcgtggtaggggatgacagccagagcatttattctttc
cggggagcccatgtcgagaacatcctgacgtttcccgaccggtatcccgaggcccggatt
taccgccttgagacaaactaccgctccagccctcccattcttgatctggccaaccggatt
attctcggaaacgaaagacgcatcgaaaaaacactccgtccctttcatacggaggaggga
gaggctccccgcacggtcggtctttattccgatgccgatcaggcccacttcatcggctcg
acggtcgaccaacttctcgatggtggcactcaggcttccgaaatcgcaatcctttaccgc
tcccattatctgagtcttccaatccagttcgaactcgcccgacggaaaattccgttttcg
atcacgtccggattgcgcttttacgaacaggcccacatcaaggatgtcctggcgcatctc
cgtcttctcctgaatcctcgggacacccttgccatgacccggcttctccggatgattccc
cgaatgggagaacgatcttccgaaaaactgatccgtgtcctgggagaggttgaagacgtc
ttttccggcctgacggacgaaaaagttctcaaaaccgccccttccctctcacgggaaggc
gtccgcaaactgggggagcgactgttctccctccgggagttgcagcggaaggaagagtct
acggtcggtctccttgtgatggaaattctcgaagagggatatcggcgggatctctatgat
atccgggaggatccggaggaacgggaggcggatcttgtcgcctttgccgaacagctgggc
gaacagaaagacctggaggggtttctcggcgaaatcacgcttctggaaaatcttgaagag
atggccctttcgaatgcttcggtgccggacagggtcattctttcctccatccatcaggcg
aagggtctcgaatgggacacggtctttgtcctctcgatgaatgaaggggtctttcctccc
gaaaagtctgccctccgtccccaggacctcgaggaggagcgccgcctgttttatgttgcg
gtcacccgtgcccgtcgggaccttttgctgtgcgttccggaaagcgccatttcccgtgga
aggggggaacgtctctatccttcccgctttttatccgaaatcggatcggacctcgtttcc
gaaacacgatatgagtcctggagcttctga
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