Leptospirillum ferriphilum ML-04: LFML04_1517
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Entry
LFML04_1517 CDS
T02319
Name
(GenBank) putative DNA-directed RNA polymerase, omega subunit
KO
K03060
DNA-directed RNA polymerase subunit omega [EC:
2.7.7.6
]
Organism
lfi
Leptospirillum ferriphilum ML-04
Pathway
lfi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lfi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LFML04_1517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfi03021
]
LFML04_1517
03400 DNA repair and recombination proteins [BR:
lfi03400
]
LFML04_1517
Enzymes [BR:
lfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LFML04_1517
Transcription machinery [BR:
lfi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LFML04_1517
DNA repair and recombination proteins [BR:
lfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LFML04_1517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb6
Motif
Other DBs
NCBI-ProteinID:
AFS53727
UniProt:
J9ZDF0
LinkDB
All DBs
Position
1444361..1444765
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AA seq
134 aa
AA seq
DB search
MNDLVTRPIEVTPDIIDSRYRLVIAAAKRARQLMEGAPVRVEKRYLKETTTALQEIVEKK
IPIITGEEAVRIEAGRREKLRERARLEERFSYSRGYALDPSDVIHADVMTYHHPEDSTQA
VEGEHEAEDADTED
NT seq
405 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctcgtcacacgccccatcgaagttacacccgatattatcgacagccgctat
cgactcgtcatcgccgccgcgaaacgcgcgcgacagctgatggagggtgctccggtcagg
gtcgaaaagcgctacctgaaagaaaccaccaccgccctgcaggaaattgtagaaaaaaag
attccgatcatcaccggagaagaagctgtccggatcgaggccgggcgccgggaaaagctc
cgcgagcgtgcccgtttggaagagcggttttcctattcccgcggatatgccctcgatccc
tcggatgtcatccatgcggatgtcatgacttaccatcatccggaggattccacccaggcg
gtggaaggcgagcatgaagccgaggacgcggacaccgaggattga
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