Leptospirillum ferriphilum ML-04: LFML04_1587
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Entry
LFML04_1587 CDS
T02319
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lfi
Leptospirillum ferriphilum ML-04
Pathway
lfi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lfi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LFML04_1587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfi03021
]
LFML04_1587
03400 DNA repair and recombination proteins [BR:
lfi03400
]
LFML04_1587
Enzymes [BR:
lfi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LFML04_1587
Transcription machinery [BR:
lfi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LFML04_1587
DNA repair and recombination proteins [BR:
lfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LFML04_1587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AFS53797
UniProt:
J9ZDT8
LinkDB
All DBs
Position
complement(1517870..1522627)
Genome browser
AA seq
1585 aa
AA seq
DB search
MSNENFKDELNQVAGSATEADFLPVSTEANIHEEDTFGGGHHRHAHPLRIDSEVMSFSAL
KIMLASSEKIRSWSFGEVKKPETINYRSFKPERDGLFCAKIFGPVKDWECNCGKYKRMKH
RGVICDKCGVEVIQSKVRRERMGHIELAAPVAHIWFLKGLPSRIGNLLDMTIKDLDQILY
FESYVITDLGDILEQIDQAKNSQMRSLLQKNAKSVYKVSPVKGETVKLTDPVTDDFFKDN
ETLPIVAVVEREVGQFEEWASLLASNEEKGKTKKSKSKENAQVSPESQDGIKIKFRNPLS
LDFYSKDTGDILHRGGTRLSDVSLKTDIILVVVEEDLLTNLHKTGSHFDKMREDLELDFK
RHRPISKEEFERYKREFPRSNMKGEIGAEAIRTLLKNLNLEELATEMHALMLDPAVSSAS
KKKISKRLKIVEAFRKSGNRPEWMILDVIPVLPPDLRPLVPLDGGRFATSDLNDLYRRVI
NRNNRLKRLLDVSSPTPQLIIHNEIRMLQEAVDALFDNGRRGRVIRGANRRPLKSLSDML
KGKQGRFRQNLLGKRVDYSGRSVIVIGPELKLNQCGLPKKMALELFKPFIFQKLEARGLV
SNIKTAKKKVEKEDPVVWDILDEVIQEHPVLLNRAPTLHRLGIQAFDPVLVEGKAIRLHP
LVCAAFNADFDGDQMAVHVPLSVEAQLEARVLMMSINNILSPANGKPIMVPTQDMVLGCY
YLSKERKGSKGEGFSFSSAEEVRIAYDAGVVEPHARIRVRMTDASGQVKTHETTVGRVLF
SGILPSGIRFEEVNKELTKKVLTNLIDQCFRKSGRQETVGFLDRIKQIGFEFATRSGISI
AIGDMRIPKNKSEAIEKANLEVLEIENQYNEGLITAGERYNKVIDKWAQVTELVADEMMK
ELKAEELAVQNGTAVSEGETPVRFNSIYMMADSGARGSAQQIRQLGGMRGLMAKPSGEII
ETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVIITEEDCG
TLNGIEVTALVEGGETIEPLEERILGRVAAEDIFVTVLKGQERITEIVVGAGEEINEEKI
ERIKESGLDLIKIRSVLTCQTRRGVCAACYGRDLSSGKRVELGEAIGIIAAQSIGEPGTQ
LTMRTFHIGGTAQVAKQSIHEAKRDGKVRYDNLTTVRNKEGANIAMSKNGKLVIVGLDGR
EKERYSIVYGARVLLEDGKEVSIGSKLVEWDPFSTPILTEASGQVVFRDIQDRVTMREEI
DEASGLKSRVIIDNAKQNMRPRIEIREAGSKNRKEYPLPIGAHILVEEKENVSTGDVIAK
IPRESTKTKDITGGLPRVAELFEARKPKEQAVITEIEGIVEFKDGRQGRSNRVILVKNEQ
GEEKEYTIPKGKHVSVHENDWVEAGEPLMDGSVNPHDILNVLGPQDLMTYLVNEVQEVYR
LQGVSINDKHIEVIVRQMLRKVRIDDPGDTDFLVGSQVDRGIFEEVNDQIVQLGKLPAKG
GSMLLGITKAALSTESFISAASFQETTRVLTEAAINGKTDALVGLKENVIVGRLIPAGTG
FPKFRMTAVGEVESESQKELSESGS
NT seq
4758 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaatgaaaattttaaagatgaattaaatcaagtggcaggttccgcgacggaagca
gattttttacctgtttccacggaagcaaatatacatgaggaagacacctttggcggagga
catcaccgccatgcccatccattaaggattgattcagaggtgatgtctttttctgcatta
aaaatcatgttggcatcgtccgaaaaaattcggtcgtggtcatttggtgaagtcaaaaag
cctgaaacgattaattatcgttcttttaaaccagaaagagatgggctgttttgtgcaaaa
atttttgggcctgtaaaagactgggaatgtaactgcggaaaatataagagaatgaagcac
cgtggagttatttgtgataagtgcggtgtcgaggtcattcaaagcaaggtcagacgcgaa
cgaatgggtcatattgaattggcagcacccgttgcacacatctggtttttgaaaggcctg
ccctcgagaatcggaaatcttcttgatatgacaattaaggatctagaccaaatcctttat
tttgaatcctatgtgatcacggatttgggagatattctggagcagatcgatcaagcaaaa
aacagtcaaatgcgttctctcctccaaaagaacgccaagtctgtatataaggtttctcct
gttaaaggggaaacggtgaagttaacggatcctgtaacggatgacttttttaaggacaat
gaaactcttccgattgttgcagttgttgagagagaagttgggcaattcgaggagtgggca
agtttattagcttcaaatgaagaaaaaggaaaaacaaagaaaagtaaatcgaaagaaaat
gctcaagtcagtcccgaatcgcaagacggaataaagattaagttccggaaccctctttcc
ttggacttttattcaaaagatacaggagatatccttcatcggggtggaacgagactttcg
gatgtttccctcaaaacggacatcatcctcgtcgttgtggaagaggacctcttaacaaat
ttgcataagactggttctcattttgacaaaatgcgtgaggatttagaacttgactttaaa
cgccatcggccgatttcaaaggaagaatttgaacgatacaagagagaatttcctcgatcg
aacatgaagggtgaaattggcgcggaggcgatcaggacacttctcaagaacttgaatctc
gaagaacttgctactgaaatgcacgcattaatgctcgatccggccgtgagctcggcaagc
aagaaaaaaatatccaagagactcaaaattgttgaggctttccggaaatctggaaaccgt
cccgaatggatgatactggatgttatccctgtccttccgcctgacctcagaccactagtg
cctttggatggtggacgttttgcgacttcggacctcaacgatctctaccgtcgagtgatc
aatcggaacaatcgattgaaaaggttgcttgatgtctcttccccaactccccaacttatt
attcataatgaaattcgtatgctgcaggaagctgtcgatgccttgtttgataatggccgc
agagggagagtgatcaggggagcaaaccggagaccgttaaaatctctctccgatatgctt
aagggcaaacaagggcgttttcgccagaatctcttgggaaaacgtgtagattattcgggc
agaagtgtgattgtgataggacctgaacttaagctgaatcaatgtggtttgcccaaaaaa
atggcgcttgagctctttaagccatttatttttcaaaagcttgaggcgagaggcctggta
agtaatatcaagactgcaaagaaaaaagttgagaaagaagatccggttgtgtgggatatt
ttggatgaagttatccaggagcatcctgtacttctgaacagggcgccgacacttcatcga
ctcggcattcaagcttttgaccctgttcttgtcgaagggaaggcgattcgtttgcatccc
cttgtttgcgcagcatttaatgctgattttgatggcgaccaaatggctgtccatgttccg
ttgtcggttgaagcgcagttggaggcgagggttttgatgatgagcatcaataacattttg
tcgccggccaacggaaagccaattatggtgcctacgcaggatatggttcttggatgttat
tacctcagcaaggaacggaagggttctaagggagaaggtttttcattcagttcagccgaa
gaagttcggattgcctatgatgcaggtgttgttgagccccatgcgagaattcgagtccgc
atgacagatgcatccgggcaggtgaaaacgcatgagacaacagtcggaagagttctcttt
tctggcattcttccgagcgggattcggtttgaggaagtaaacaaggaattgacaaaaaaa
gttctgacaaaccttattgatcaatgtttccggaagtcagggagacaggagacggtagga
tttttggacagaattaagcagataggttttgagtttgctactcgatccggtatctcgatc
gcgattggagatatgagaattcccaagaacaaatcggaagctattgaaaaagccaatctc
gaagttcttgaaattgaaaatcaatacaatgaaggtttgatcactgctggcgaacgttat
aacaaggtgatcgataaatgggcccaagtcactgagcttgtggcggatgaaatgatgaaa
gagttaaaagctgaagaattagccgtccaaaacggtactgcagttagcgaaggggaaacc
cctgttcgatttaactctatctacatgatggcggattcaggagcgagagggtcggcgcag
caaattcggcaattgggtggaatgcgcggtttgatggccaagccttccggagaaattatc
gagactcctatcacagcgaactttcgtgaaggactaaatgtgctccagtattttatttct
acccatggagcacggaaaggtcttgctgatacagctcttaagactgcgaattcaggttac
ctcacccgtaggctcgtcgatgtcgcacaggatgtcatcatcacggaagaagattgcgga
accttaaacggcatcgaagtgacagcattggtcgaaggaggggaaacaattgaacctctg
gaagagcgtattcttggaagagttgcagcagaagatatttttgttactgtcctgaaaggc
caggaacgaattacagagattgttgtcggagcaggtgaagaaattaatgaggaaaaaatc
gagcgcatcaaggaatctggacttgatcttattaaaattcggtctgttctaacgtgccaa
acccgacgcggtgtttgtgcagcatgttatggacgggacttgagttccgggaagagggta
gagcttggagaggcgattggaattattgccgcccaatcgatcggtgaaccaggaactcag
ctgacaatgagaacttttcatattggtggaaccgcgcaggttgccaagcagtctatccat
gaggctaagagagacggaaaagtccgatacgacaatctcaccactgttcgtaacaaagaa
ggtgcaaatattgccatgtcaaaaaatggcaagttggttatcgtaggattggacggcaga
gaaaaagagcgatattcgattgtctacggggcccgcgtgctccttgaagatgggaaggaa
gtctctataggctcaaaattggtagagtgggatcctttctctacgccaattcttactgaa
gccagtggtcaggttgtattccgagatatccaggatcgggttaccatgcgggaagaaata
gatgaggcatctggattaaagagtcgtgtgattatcgacaatgcaaaacaaaacatgcgt
cctagaattgaaattcgagaagccggatcaaaaaatcggaaagagtatccccttccaatt
ggagcacatattcttgtcgaagaaaaagaaaatgtatctaccggcgatgtcatagcaaaa
attcctagagagtctacaaagacaaaagatatcactggtggtctcccgcgtgttgctgag
ctatttgaagcaagaaaaccgaaagaacaagcagttattacggaaattgagggaattgta
gagtttaaggatggacggcagggtcgttcaaacagagtcatccttgtcaagaatgaacag
ggcgaagaaaaagaatatacgataccaaagggaaaacatgtcagtgtgcatgagaatgac
tgggttgaggctggagagccgcttatggatggctctgttaacccgcatgacattctgaat
gttcttgggccgcaggacttgatgacctatttggttaatgaagtgcaggaagtatacaga
cttcaaggtgtttcgatcaatgataaacatattgaggtcattgttcgccagatgcttcgt
aaagtcagaatcgatgatccaggagacacggattttctcgttggtagccaggttgatcga
ggaatttttgaagaggtcaatgatcagattgttcagttaggaaagctccctgcaaaggga
gggtctatgcttttgggaatcacgaaagcggctctatcaacggaaagttttatttcagca
gcatcgttccaagaaacaacaagagtcctgacagaagcagctataaatgggaaaacagat
gcattagtgggactcaaggaaaatgtgattgtgggacgattgatccctgcaggtacggga
tttcctaagttccgaatgacagcagttggagaggtggagtcagaatcgcaaaaagaattg
agtgagtctggttcttga
DBGET
integrated database retrieval system
