KEGG   Leptospirillum ferriphilum ML-04: LFML04_2024
Entry
LFML04_2024       CDS       T02319                                 
Symbol
recB
Name
(GenBank) putative exodeoxyribonuclease V, beta subunit
  KO
K03582  exodeoxyribonuclease V beta subunit [EC:3.1.11.5]
Organism
lfi  Leptospirillum ferriphilum ML-04
Pathway
lfi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:lfi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    LFML04_2024 (recB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lfi03400]
    LFML04_2024 (recB)
Enzymes [BR:lfi01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     LFML04_2024 (recB)
DNA repair and recombination proteins [BR:lfi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     LFML04_2024 (recB)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C UvrD_C_2 AAA_19 PDDEXK_1 Viral_helicase1 AAA_30 DEAD AAA_22 Helicase_RecD AAA_25 ResIII ATPase AAA_11
Other DBs
NCBI-ProteinID: AFS54221
UniProt: J9ZDJ9
LinkDB
Position
complement(1921891..1925187)
AA seq 1098 aa
MTGFSETPLYLGLPLEGIHAIEASAGTGKTTTLALLYLSVILSGVSPENILVVTFTRAAA
QDVRERIQKLLEDVRQWRSGSKAEILPDLRAYLETLETDPLLLDMRLREALVVFDRAPIQ
TIHSFCQSLLRQMSFLLGAPANLVLVPEDQPVLYESSVRLWRSLFYGRDSRLAEFFLSVW
EDGPGGWVRMFRTASARRGSPETCFRPVEEVMEQYRARRQTFREALGIVFPERSREVLPH
RVRDLLGDREIPALGLSYDDADLGETFPPGEDALRELLGRTLQSARDLQEVIRSSFRDLA
GTWKHRELREREVRGIATYDDLILRVADSLERESVAQRLRDRFPVAFVDESQDTSRDQSG
IFARIYRDPRPGSALFWIGDPKQSIYRFRGADVGAYLEFSRQAKSSPASPPLRLSVNYRS
SPGVLHAVNRLFGRHPSPFLLEGVSYHPSSPVSGRKPELVDPAFSGSCFLVYPGRGPKDK
LDDFARVTADEVDRLLSGKILLNDRPLAASDIAVLVPKNDDGERVAGFFRERGIPYNSAS
PGSVFHTREADEIATVLDALLSPWRMPVLCLALGTGLFGWDARRIDGLVRDPEQARPVQE
VFLEASRLWRTHGIRAAFRELFFRMGVWTRLLSAGRTRQRIDRLVDRIEKAAGQFPTPPD
QHRFFSRARLSPEGESHEETVGGEPGTGVHILTVHKSKGLEFPVVFVPFGIPEKTRKEEE
AFREEDGEDSDQSESLRLLYVALTRARERVYLFCPLNRKKQSALDHLLETDRHLEGRREK
TVTEKRFFAMREALEEAFSGVDGVSFFEPRESSGERNHKTPKEQGKVEDEIVVRSLAHPL
PVPRRVTSFTAIVARGEDSDAWNGTDPLIGDEDGEDLSGNLVERPGAAGRAFGVFVHGVL
EEAGKWIVRYKKAKKISPSRADVREWLRSSFPSRPSDEVGGWTSSALELAEQGLCTPLIP
ISGLPLADLLDDRSRFEEPFLLRLPDEENAGEREVASHLRGVIDVVVWSGKTVYLIDYKT
NFLTGEGNPYAPESLERVLSDHRYDLQARIYSGACRRHLALTGNEGEFGGFLFLFLRGMG
RERGSGTVLWTPPKEGGP
NT seq 3297 nt   +upstreamnt  +downstreamnt
atgacagggttttccgagacccctctctacctcgggttgcccctcgaagggatccatgcg
atcgaggcttccgccggcaccggaaagacaacgacgcttgccctcctctatctgtcggtc
attctgtccggggtttccccggaaaatattctcgtggtgacgtttacccgcgctgcggcg
caggatgtccgggagcggatccaaaagctcctggaagatgtccggcagtggcgctccggt
tcgaaagcggagatcctcccggatctccgcgcgtatcttgagaccctcgaaacggaccct
cttcttcttgacatgagattgagggaagcgctcgtcgtgtttgaccgtgctcccatccag
acaattcattccttctgccagtcccttctccgccagatgtcgtttcttctgggagcgccg
gcaaatcttgttctggtccccgaagaccagcccgtgctctatgagtcttccgtccggctc
tggcggtccctcttctatggacgggattcgcgtctggccgagttcttcctgtccgtctgg
gaggacggaccggggggatgggtccggatgttccggacggcctccgcccggaggggatct
ccggaaacctgtttccggccggtcgaggaggtgatggaacagtatcgtgcccggcgacag
acgtttcgcgaggccctggggatcgtttttcccgagcggtcccgggaagtccttccccac
agggtgcgggaccttctgggagacagggagattcccgcactgggcctttcctatgacgat
gcggacctcggggagacttttcctccgggggaagacgccctgcgcgaattgctcggcagg
actcttcagtccgcccgggatcttcaggaggtgatacggtcctcttttcgggatctggct
gggacctggaaacatcgggagcttcgcgaacgggaggtccggggtattgcgacctatgac
gatctgattctccgggtcgcggactccctggagcgtgaatcggtggcacaacgtctccgg
gaccgtttccccgtggcgtttgtcgatgagtcccaggacacgagccgcgatcagtccgga
atcttcgcccggatctatcgggatccccgtccggggtccgccctgttctggattggcgat
cccaagcaatcgatctaccgtttccggggagccgatgtcggggcctatctcgagttttcc
cgccaggcaaagtcctctccggcctctccgcctctccgcctctccgtcaattaccgctct
tcgccgggggttctgcatgcggtcaaccggctcttcggacgtcatccgtccccgtttctt
ctggaaggggtgtcctatcatccttcttcaccggtctcgggcaggaagcccgaacttgtg
gatccggccttttccgggtcgtgttttctggtttatcccggtcgtggtccgaaggacaaa
ctggatgattttgcacgggtgacggccgacgaggtggaccgtcttctctcgggaaagata
ctcctgaacgaccggccgcttgcggcgtcggatatcgccgttcttgtcccgaaaaatgat
gacggggaacgggtcgccggtttctttcgggagcggggaatcccctacaacagtgcgtct
ccgggttccgtcttccatacgcgcgaagcggacgagatcgcgacggtgctggacgcgctc
ctttccccctggcgcatgccggtcctttgtctggcgctcggaaccgggctgttcgggtgg
gacgcccgaaggattgatggtcttgtccgggacccggagcaggcccggcccgttcaggaa
gtctttctggaagcgtcccggctctggcgcacgcacggcatccgggcggctttccgggag
ctgtttttccggatgggggtctggacgcgacttttgtccgccgggcgaacccgtcagcgc
atcgaccggcttgttgaccggattgaaaaggcggccggacagtttccgacgccacccgac
cagcatcgctttttctcccgggcccgcctgtccccagagggagaatcgcatgaagaaacc
gtcgggggagagccgggaacgggcgtgcatattttgaccgttcacaagagcaaggggctc
gagttccctgtcgttttcgtgccgtttggcattcccgaaaaaacacggaaagaggaagag
gcgttccgggaggaggacggggaggattcggaccagagcgaatctctccgccttctttat
gtggccctgacgcgcgcgcgggaaagggtttatcttttctgtcccctgaaccggaaaaag
cagtctgcgcttgatcaccttctggagacggatcggcatctggaggggcggcgtgaaaaa
accgtcactgaaaaacgcttctttgccatgcgggaagcgctggaagaggctttttccggt
gtggacggggtttctttttttgagccccgggaatcgtccggagagaggaaccataaaacg
cccaaagagcaagggaaggttgaagacgagattgttgtccgctctctcgcccaccccctt
cccgttccccggcgggtgacaagcttcaccgccatcgtcgcccggggagaggacagcgat
gcctggaacggcaccgaccccctgattggtgacgaagacggagaggatctctcggggaat
ctggtggaaagaccgggggctgccggtcgggcctttggtgtgtttgtgcacggggtgctg
gaggaagccggcaaatggatcgtgcgttacaagaaagccaaaaaaatctctccgtcccgt
gcggacgtgcgggaatggctccggtcgtcttttccctcccggccttcggacgaggtgggg
ggctggacctcgtccgcgctggagctggcggagcagggcctttgtacgccgctgattccc
atctcaggtcttccgctggcggaccttctggatgatcgctcccgcttcgaagaaccgttt
cttctccggttgccggacgaggaaaacgccggggaaagggaggtcgcctcccatcttcgg
ggagtgatcgatgtcgttgtctggtccggaaagaccgtctatctgatcgactacaagacg
aatttcctgacaggagagggaaacccgtacgcccccgaatccctggagcgtgtgctctct
gatcatcgctacgatctccaggcccggatctattccggagcctgccgccggcatctggca
ctgaccgggaacgaaggggaattcggcgggtttctgtttcttttcctgcggggaatgggg
cgcgaaagaggttcgggaaccgtcctttggacacccccgaaggaggggggtccatga

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