Entry |
|
Symbol |
recB
|
Name |
(GenBank) putative exodeoxyribonuclease V, beta subunit
|
KO |
|
Organism |
lfi Leptospirillum ferriphilum ML-04
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:lfi00001]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LFML04_2024 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:lfi03400]
LFML04_2024 (recB)
Enzymes [BR:lfi01000]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LFML04_2024 (recB)
DNA repair and recombination proteins [BR:lfi03400]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LFML04_2024 (recB)
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
complement(1921891..1925187)
|
AA seq |
1098 aa
MTGFSETPLYLGLPLEGIHAIEASAGTGKTTTLALLYLSVILSGVSPENILVVTFTRAAA
QDVRERIQKLLEDVRQWRSGSKAEILPDLRAYLETLETDPLLLDMRLREALVVFDRAPIQ
TIHSFCQSLLRQMSFLLGAPANLVLVPEDQPVLYESSVRLWRSLFYGRDSRLAEFFLSVW
EDGPGGWVRMFRTASARRGSPETCFRPVEEVMEQYRARRQTFREALGIVFPERSREVLPH
RVRDLLGDREIPALGLSYDDADLGETFPPGEDALRELLGRTLQSARDLQEVIRSSFRDLA
GTWKHRELREREVRGIATYDDLILRVADSLERESVAQRLRDRFPVAFVDESQDTSRDQSG
IFARIYRDPRPGSALFWIGDPKQSIYRFRGADVGAYLEFSRQAKSSPASPPLRLSVNYRS
SPGVLHAVNRLFGRHPSPFLLEGVSYHPSSPVSGRKPELVDPAFSGSCFLVYPGRGPKDK
LDDFARVTADEVDRLLSGKILLNDRPLAASDIAVLVPKNDDGERVAGFFRERGIPYNSAS
PGSVFHTREADEIATVLDALLSPWRMPVLCLALGTGLFGWDARRIDGLVRDPEQARPVQE
VFLEASRLWRTHGIRAAFRELFFRMGVWTRLLSAGRTRQRIDRLVDRIEKAAGQFPTPPD
QHRFFSRARLSPEGESHEETVGGEPGTGVHILTVHKSKGLEFPVVFVPFGIPEKTRKEEE
AFREEDGEDSDQSESLRLLYVALTRARERVYLFCPLNRKKQSALDHLLETDRHLEGRREK
TVTEKRFFAMREALEEAFSGVDGVSFFEPRESSGERNHKTPKEQGKVEDEIVVRSLAHPL
PVPRRVTSFTAIVARGEDSDAWNGTDPLIGDEDGEDLSGNLVERPGAAGRAFGVFVHGVL
EEAGKWIVRYKKAKKISPSRADVREWLRSSFPSRPSDEVGGWTSSALELAEQGLCTPLIP
ISGLPLADLLDDRSRFEEPFLLRLPDEENAGEREVASHLRGVIDVVVWSGKTVYLIDYKT
NFLTGEGNPYAPESLERVLSDHRYDLQARIYSGACRRHLALTGNEGEFGGFLFLFLRGMG
RERGSGTVLWTPPKEGGP |
NT seq |
3297 nt +upstreamnt +downstreamnt
atgacagggttttccgagacccctctctacctcgggttgcccctcgaagggatccatgcg
atcgaggcttccgccggcaccggaaagacaacgacgcttgccctcctctatctgtcggtc
attctgtccggggtttccccggaaaatattctcgtggtgacgtttacccgcgctgcggcg
caggatgtccgggagcggatccaaaagctcctggaagatgtccggcagtggcgctccggt
tcgaaagcggagatcctcccggatctccgcgcgtatcttgagaccctcgaaacggaccct
cttcttcttgacatgagattgagggaagcgctcgtcgtgtttgaccgtgctcccatccag
acaattcattccttctgccagtcccttctccgccagatgtcgtttcttctgggagcgccg
gcaaatcttgttctggtccccgaagaccagcccgtgctctatgagtcttccgtccggctc
tggcggtccctcttctatggacgggattcgcgtctggccgagttcttcctgtccgtctgg
gaggacggaccggggggatgggtccggatgttccggacggcctccgcccggaggggatct
ccggaaacctgtttccggccggtcgaggaggtgatggaacagtatcgtgcccggcgacag
acgtttcgcgaggccctggggatcgtttttcccgagcggtcccgggaagtccttccccac
agggtgcgggaccttctgggagacagggagattcccgcactgggcctttcctatgacgat
gcggacctcggggagacttttcctccgggggaagacgccctgcgcgaattgctcggcagg
actcttcagtccgcccgggatcttcaggaggtgatacggtcctcttttcgggatctggct
gggacctggaaacatcgggagcttcgcgaacgggaggtccggggtattgcgacctatgac
gatctgattctccgggtcgcggactccctggagcgtgaatcggtggcacaacgtctccgg
gaccgtttccccgtggcgtttgtcgatgagtcccaggacacgagccgcgatcagtccgga
atcttcgcccggatctatcgggatccccgtccggggtccgccctgttctggattggcgat
cccaagcaatcgatctaccgtttccggggagccgatgtcggggcctatctcgagttttcc
cgccaggcaaagtcctctccggcctctccgcctctccgcctctccgtcaattaccgctct
tcgccgggggttctgcatgcggtcaaccggctcttcggacgtcatccgtccccgtttctt
ctggaaggggtgtcctatcatccttcttcaccggtctcgggcaggaagcccgaacttgtg
gatccggccttttccgggtcgtgttttctggtttatcccggtcgtggtccgaaggacaaa
ctggatgattttgcacgggtgacggccgacgaggtggaccgtcttctctcgggaaagata
ctcctgaacgaccggccgcttgcggcgtcggatatcgccgttcttgtcccgaaaaatgat
gacggggaacgggtcgccggtttctttcgggagcggggaatcccctacaacagtgcgtct
ccgggttccgtcttccatacgcgcgaagcggacgagatcgcgacggtgctggacgcgctc
ctttccccctggcgcatgccggtcctttgtctggcgctcggaaccgggctgttcgggtgg
gacgcccgaaggattgatggtcttgtccgggacccggagcaggcccggcccgttcaggaa
gtctttctggaagcgtcccggctctggcgcacgcacggcatccgggcggctttccgggag
ctgtttttccggatgggggtctggacgcgacttttgtccgccgggcgaacccgtcagcgc
atcgaccggcttgttgaccggattgaaaaggcggccggacagtttccgacgccacccgac
cagcatcgctttttctcccgggcccgcctgtccccagagggagaatcgcatgaagaaacc
gtcgggggagagccgggaacgggcgtgcatattttgaccgttcacaagagcaaggggctc
gagttccctgtcgttttcgtgccgtttggcattcccgaaaaaacacggaaagaggaagag
gcgttccgggaggaggacggggaggattcggaccagagcgaatctctccgccttctttat
gtggccctgacgcgcgcgcgggaaagggtttatcttttctgtcccctgaaccggaaaaag
cagtctgcgcttgatcaccttctggagacggatcggcatctggaggggcggcgtgaaaaa
accgtcactgaaaaacgcttctttgccatgcgggaagcgctggaagaggctttttccggt
gtggacggggtttctttttttgagccccgggaatcgtccggagagaggaaccataaaacg
cccaaagagcaagggaaggttgaagacgagattgttgtccgctctctcgcccaccccctt
cccgttccccggcgggtgacaagcttcaccgccatcgtcgcccggggagaggacagcgat
gcctggaacggcaccgaccccctgattggtgacgaagacggagaggatctctcggggaat
ctggtggaaagaccgggggctgccggtcgggcctttggtgtgtttgtgcacggggtgctg
gaggaagccggcaaatggatcgtgcgttacaagaaagccaaaaaaatctctccgtcccgt
gcggacgtgcgggaatggctccggtcgtcttttccctcccggccttcggacgaggtgggg
ggctggacctcgtccgcgctggagctggcggagcagggcctttgtacgccgctgattccc
atctcaggtcttccgctggcggaccttctggatgatcgctcccgcttcgaagaaccgttt
cttctccggttgccggacgaggaaaacgccggggaaagggaggtcgcctcccatcttcgg
ggagtgatcgatgtcgttgtctggtccggaaagaccgtctatctgatcgactacaagacg
aatttcctgacaggagagggaaacccgtacgcccccgaatccctggagcgtgtgctctct
gatcatcgctacgatctccaggcccggatctattccggagcctgccgccggcatctggca
ctgaccgggaacgaaggggaattcggcgggtttctgtttcttttcctgcggggaatgggg
cgcgaaagaggttcgggaaccgtcctttggacacccccgaaggaggggggtccatga |