Leptospirillum ferriphilum ML-04: LFML04_2068
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Entry
LFML04_2068 CDS
T02319
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase, UvrD/REP family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
lfi
Leptospirillum ferriphilum ML-04
Pathway
lfi03420
Nucleotide excision repair
lfi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LFML04_2068 (pcrA)
03430 Mismatch repair
LFML04_2068 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfi03400
]
LFML04_2068 (pcrA)
Enzymes [BR:
lfi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LFML04_2068 (pcrA)
DNA repair and recombination proteins [BR:
lfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LFML04_2068 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
LFML04_2068 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
AAA_16
AAA_22
DEAD
ResIII
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AFS54264
UniProt:
J9ZD29
LinkDB
All DBs
Position
complement(1967133..1969373)
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AA seq
746 aa
AA seq
DB search
MTREELNPAQQEAVSHEGGPLLVLAPAGSGKTRVVIARLLYLLDRYGWSEERLLVVTFTR
KAARELLHRISRLRPSSRPSWVGTFHSVAARMLRQHAERVDLPREFTIVDGPDQLQMIRD
LLGRQGLSDKEVDPKKLAGRIGKWKSAGVDPAEAIRTSFGPFRIQAELYAAYQDNLALQK
ALDFDDLLLTLVRCLEQDPEVRESYQRQFEHILVDEYQDTNPLQERLLRLLSRDRQNVTV
VGDDDQSIYRFRGAEVGHILSFPKEYPGARQVVLTVNYRSTRPIVTAASSMISSALARYR
KDMVSTGRPGEPVFLKKLDSEWAEARFVARTIREKVERGAMFRDQVVLFRMNVQAQPFVR
AFSEAGIPFQTRGAVQGFFNRREIRDLLAYLRVSANPFDRISLGRILNIPPRGMGAKARE
RLDQQAGNPGLSSWELLERLSLDLSGKARESARAFANDLQEASRMARGGDGPLSLLQFWL
SRTGYEKWVSEEEAGEDAPGREENLKELLRMSERFGNGIGELTDRTPTGVFLEELALSQE
DPGEPGESPDRVSLLTIHQAKGLEFPHVYLVGAEEDILPMKSREKVDVEEERRLFYVAMT
RARDSLVITWCLTRQLFGRTESPRPSRFLRDIPPEAFQGDRPVFRPETSAPRQTSESFQR
KFFSPPPLAPSRPGRDFRPVPEKGSPTPTGVLRPEWIGKTVVHPRFGRGRVEEAYGEGGD
LELSIRFESSGVRRLLERFANLQVDG
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgacccgggaggaactgaatccggcccaacaggaagccgtttcccatgagggtggccct
cttctcgtgctcgctcccgccggatcgggaaagacccgggttgtcatcgccaggctcctc
tatcttctcgaccgctacggctggtccgaggaacgtcttctggtcgtcacctttacccgc
aaggcggcccgcgagcttctgcacagaatttcccggctgcgcccgtcctcccgtccttcc
tgggtaggaaccttccactccgttgcagcacggatgctccgtcaacatgccgaacgagtg
gaccttccccgggagttcaccattgttgacggtcctgatcagctccagatgatccgggac
cttctcggtcgccaggggttgtcggacaaagaggtggatccgaaaaagctggccggccgg
attggaaaatggaagtctgcgggcgtcgatcccgccgaggcaatccggacatcctttggc
ccgtttcgtattcaggcggagctttacgctgcctaccaggacaatcttgctctccagaaa
gccctggattttgacgatctcttgctgacccttgtccggtgtctcgaacaggatccggag
gtgcgcgagtcttatcagcgacagttcgagcacattctggtggacgaatatcaggatacg
aatcccttgcaggaacgtctgcttcgtcttctttcgcgggaccggcagaacgtgacggtt
gtcggggacgacgaccagagtatttatcgcttccggggtgccgaagtgggacatatcctg
tcgtttccgaaagaatatcccggagcccggcaggttgtcctcacggtcaactacaggtcg
acaaggcctattgtgacggcggcttcctccatgatttcctcggccctcgcgcgctacagg
aaagacatggtgtcgaccggacgtcccggggaaccggtctttttgaagaagcttgacagc
gaatgggcggaagcccgatttgtggcccgtaccatccgggagaaagtggagcggggagcc
atgtttcgggatcaggtggtccttttccggatgaatgttcaggctcagccatttgtccgg
gccttttccgaagcggggatcccctttcagacccggggcgccgtccagggttttttcaat
cgccgggaaatccgggatctgctggcctatctgagggtatcggccaatccgtttgaccgg
atcagcctgggccggatcctgaatattcccccgagagggatgggggcgaaggcccgcgaa
cgtctggatcagcaggctggaaatccgggtctttcttcctgggaacttctcgaaagactc
tcgctcgatctgtcgggaaaagcgcgggaatcggccagagccttcgcaaacgatcttcag
gaagcgtcccggatggccagaggcggtgacggtccgctctcccttctccagttctggctt
tcccggaccggttacgagaaatgggtgtcggaggaagaggctggagaagatgctcccggt
cgcgaagagaatctgaaagagcttctccggatgtccgaacgattcggaaacgggatcggg
gagctgaccgaccggactccgaccggcgtttttctcgaggagctggccctgtcacaggaa
gatccgggggagccgggagagtctcccgaccgggtttcccttcttaccatccatcaggcc
aaagggctcgagtttccacacgtctaccttgtgggggcggaggaagacatccttccgatg
aagtcgagagagaaagtggatgtggaagaagagcgccgcctcttctatgtcgcaatgacg
cgggcccgggactctctggtcattacctggtgtctgacccggcagcttttcggccggacg
gaatctccccgtccttcccgttttcttcgcgacatcccgccggaagcctttcagggagac
cgtcccgtctttcgcccagagacatctgcgccgcggcagacatccgagtctttccagcgg
aagtttttttctccgccaccccttgcaccctcgcgtccgggaagggatttccggcctgtt
ccggagaagggatcgccgactccaacgggagtcttgcgcccggaatggatcggcaagaca
gtcgttcatccccgttttggtcgcggtcgggtggaggaggcctatggggaaggaggggac
cttgaattgtccatccggtttgaaagttcaggcgtccgccgactgttggaacggtttgcc
aatctgcaggtggacggatga
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