Leptospirillum ferriphilum ML-04: LFML04_2220
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Entry
LFML04_2220 CDS
T02319
Symbol
rpoD
Name
(GenBank) DNA-directed RNA polymerase, sigma70/sigma32 subunit
KO
K03086
RNA polymerase primary sigma factor
Organism
lfi
Leptospirillum ferriphilum ML-04
Pathway
lfi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lfi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LFML04_2220 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfi03021
]
LFML04_2220 (rpoD)
Transcription machinery [BR:
lfi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LFML04_2220 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Sigma70_ner
DUF5847
IBN_N
Motif
Other DBs
NCBI-ProteinID:
AFS54411
UniProt:
J9ZE50
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All DBs
Position
complement(2099783..2101579)
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AA seq
598 aa
AA seq
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MSKSEKLNEMKDLISLGKERGYLTYDELNNVLPPEAIGSDQLDNLMSYFGDMNIDIVDDE
SREAGYGEMDSEEEEGFSDLESVRGVDSEEEDEGIDMTPGTLSRIDDPVRLYLKEMGAVP
LLTREGEIAIAQRIEEGQKEVSGILFGMPLTVRSILSLREKFQTGQIGIREIVDVMEEET
EDEPEEGDSAALRDAREQFVRQTDSLSELFLKLNAISEKWKDAQKNTSKKKILREQAKKI
KTEIVELIMEMNLHRRQVELMIRQLHDVVSVLDESERTIDHSRRRLGANKEEILKAIALL
KAGKDPGERYQDPEKLELLKNYQFALERVHEAEVAALLSSSEIRDSLSLLEAGEQKVREA
KAELIKANLRLVVSIAKRYTNRGLQFLDLIQEGNIGLMKAVDKFEYKRGFKFSTYATWWI
RQAITRAIADQARTIRIPVHMIETINKLIRTTRHLVQELGREPLPEELAKEMQMPVEKVR
RVLKIAREPISLETPIGEEEDSHLGDFIEDKKSISPIDSAVRYDLVRKIGKALSSLTERE
EKVIRLRFGVGESTDHTLEEVGQDFDVTRERIRQIEAKALRKLRHPSRSKHLKSFVDW
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaagcgaaaaattaaacgagatgaaggatttgatcagtctcggaaaagaacgc
ggatatttgacttatgatgaattgaacaatgttctccccccggaagcgatcggctcggac
cagcttgataatctgatgtcctactttggcgatatgaatattgatatcgtcgatgacgag
tcgcgcgaagccggttatggagaaatggattccgaggaggaagagggattttcggatctc
gaatctgttcggggagtggatagcgaggaagaggacgaaggaatcgatatgactccggga
accctctcccggattgatgatcctgtgcgtctttacctgaaggaaatgggggcggttcct
ctcctgacgcgagaaggggagatcgccattgcccagagaatcgaagaaggacaaaaagag
gtttccggaattctttttggaatgcctctgacagtccggagcattctttcactcagggaa
aagttccagacgggccagatcggtattcgcgaaatcgtggatgttatggaagaagagacg
gaggatgagccggaagaaggggattctgctgccctgcgggatgcccgggaacagtttgtc
cgccagacagacagtctttctgagctcttcttgaagctgaatgccatttcggaaaaatgg
aaggatgcgcaaaagaatacatccaaaaagaaaatcctgcgcgaacaggcaaaaaagatc
aagacagagatcgttgaactgattatggagatgaatctccatcggagacaggttgaactc
atgattcgtcagcttcacgatgttgtgagtgtcctggacgaatcggaaaggacaattgat
cattctcgccggaggctgggagcgaacaaggaagaaatcctgaaagccatcgcgcttctg
aaggcggggaaagatcccggggagcgttatcaggatccggaaaaactggagctcctgaaa
aactaccagtttgcgctggagcgcgttcacgaagcggaagtcgcggccctcctttcctct
tcagaaatccgggacagcctgagtcttttggaggcgggcgagcaaaaagtccgtgaagcc
aaggccgaactgatcaaggcaaaccttcgtctggtcgtttctatcgccaagcgttatacg
aacagggggctccagttcctcgacctgatccaggaagggaacatcgggttgatgaaggcg
gtggacaagtttgagtataaaagaggattcaagttttcaacctatgccacgtggtggatc
cggcaggctatcacgcgggcgattgcagatcaggcccggacaatccgtatccctgtccat
atgatcgaaacgattaacaaactgatcaggacgacccgccatcttgtgcaggagctgggt
cgtgaaccgttgccggaagagctggcaaaagaaatgcaaatgccggtggaaaaagtgcgt
cgcgtcctgaagatagcccgggaaccgatctcccttgagacgcctatcggggaggaagag
gacagtcatctgggagattttatcgaggacaagaagtccatctccccgatcgattcggct
gtccgttatgatctggttcgaaagatcggaaaagcgctttcttctctgacggaaagggaa
gagaaagtgatccggttgcgctttggtgtgggggagtcgaccgatcatactctggaggaa
gtcggtcaggactttgatgtgacaagagagcgtattcgccagatcgaagcaaaggccttg
aggaagctgaggcatccaagccgcagcaagcacctcaaaagttttgtcgactggtaa
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