Leptospirillum ferriphilum ML-04: LFML04_2438
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Entry
LFML04_2438 CDS
T02319
Name
(GenBank) putative formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lfi
Leptospirillum ferriphilum ML-04
Pathway
lfi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LFML04_2438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfi03400
]
LFML04_2438
Enzymes [BR:
lfi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LFML04_2438
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LFML04_2438
DNA repair and recombination proteins [BR:
lfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LFML04_2438
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
AFS54627
UniProt:
J9ZG66
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All DBs
Position
2318763..2319770
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AA seq
335 aa
AA seq
DB search
MEFRSAKSFLHAFPLRLLQVASGAYTTDNEKERRELLYLQDEKRMPELPEAEAIRLPVLR
FFSDGVVESIRRGSNKNIWIGEEEYRLGELFLFNVRRTGKVLIFDWRTTKEKTAVLLISR
LGMSGTWLIQHLREPLPDHCHLVISFKNLAHRLVYRDPRRFGRLEWTFEEESSVILASQG
PDILKIPADEWHRQARKSSRTIRSLLLDQKISSGIGNIYASEILFAAGLSPFRTGKSLSK
RESYRILDAAREILEAAIRSGGSTIHSFQTSLGEDGRYQDRHIVYGRAGKPCPHCSTPIQ
SVKEASRTLFYCPFCQKRQLRTKENMLREALTTVQ
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaggagtgcaaaatcctttctgcatgcctttcctttaagacttctgcaggtt
gcatcaggagcatatacgacggataatgaaaaggaacgcagggaactcctctatcttcag
gatgaaaaacgcatgccagaacttccggaagcagaagcaatcagactcccggtattacgt
ttcttctcggatggtgtcgtagagtccatcaggagagggagtaacaaaaacatatggatt
ggagaggaggagtaccggttaggggaactgtttcttttcaatgtcagaagaacgggtaaa
gttctgattttcgactggagaaccaccaaagaaaagactgccgtccttttgatcagccgt
ctcggaatgtctggaacatggcttatacaacatcttcgggaacctctccctgatcattgc
catcttgtcatatcgtttaagaatttagcccaccgtcttgtttacagggatcccagaaga
tttggaaggcttgaatggactttcgaggaagagtcttctgttattctcgcctcacagggt
ccggacatattgaagattcctgcagatgagtggcacaggcaggctcgaaaatcctccaga
accatccggtcacttcttctggaccaaaaaatctcgtccggcatagggaatatctacgct
tctgaaattcttttcgcagcaggcctatcaccattcagaacaggaaaaagcctttcaaag
agggaatcctatcggatccttgacgcagccagggagattcttgaagcggccattcgaagc
ggtggatccacaattcacagttttcagacaagtcttggagaagatggtcgctatcaagac
agacacatcgtgtatggaagggcaggaaaaccctgcccccactgcagcacccctattcag
tccgtcaaggaagcatcccggaccctgttttattgccccttttgccagaaacggcaactc
cggacgaaggagaacatgctccgggaagctttgacaacagtccaatga
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