Luteibacter flocculans: IM816_02745
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Entry
IM816_02745 CDS
T08863
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lfl
Luteibacter flocculans
Pathway
lfl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IM816_02745 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfl03400
]
IM816_02745 (ligD)
Enzymes [BR:
lfl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IM816_02745 (ligD)
DNA repair and recombination proteins [BR:
lfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IM816_02745 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
NIF
Motif
Other DBs
NCBI-ProteinID:
URL59054
LinkDB
All DBs
Position
645579..646454
Genome browser
AA seq
291 aa
AA seq
DB search
MAGHVVGGITITHPERRVFGEDGPTKGEVAAYYEAVAPWMLPELSGRPLSLVRCPQGSTG
PCFFQKHHADTLGPHVKAVDIEEKDGDEAHYIYVDDVRGVLELVQMNTLEFHPWGAHADK
PDRPDRLVFDLDPSAGVEWKAIVGAAREIRERLAEAKLESFVRTSGGKGLHVVAPFRRGP
SWIAVKAFCESIADAMVAEHPKRYIAEASKTKREGLIFIDWLRNTRGATSVTGWSLRARP
GAPVAMPVRWEEIARLKSGSAFDLKKALKRAKSLDADPWEGIASLSQSLPS
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggccgggcacgtcgtcggcggcatcaccatcacccatcctgaacgccgcgtgttcggc
gaggacgggccgaccaagggcgaggttgcggcctactacgaggccgtggcgccgtggatg
ctgcccgagctgagcggcaggccgctttcgctggtgcgttgcccgcaaggctcaacgggt
ccgtgcttcttccagaaacatcacgcggatacgctcggtccgcatgtcaaagcagtggat
atcgaagagaaggacggcgacgaagcgcactacatctacgtggacgacgtgcgtggcgtg
ctcgaactcgtgcagatgaatacgctggaattccatccgtggggtgcgcatgcggacaag
cccgaccggccggatcgtctcgtgttcgatctcgatccttctgccggcgtcgaatggaag
gccatcgtgggggccgctcgtgagatccgtgagcggcttgccgaagcgaagctcgaaagc
ttcgtacgcacgtctggcggcaagggtctgcatgtcgtcgcgcctttccgccgcgggccg
tcatggatcgcggtcaaggcattctgcgaaagcatcgccgatgcgatggtggcagagcat
cccaagcgctacatcgccgaggccagcaagaccaagcgcgaagggctcatcttcatcgac
tggctgcgcaacacgcggggcgcaacgagcgtcaccggatggtcgctgcgcgcgcgtccc
ggtgcgcctgtcgccatgccggtacgttgggaggaaatcgcccgactgaaaagtggctcg
gccttcgacttgaagaaggccttgaagcgcgcgaagtcgctggatgcagacccgtgggaa
ggtatcgcatcactgagtcaatcgcttccttcgtga
DBGET
integrated database retrieval system
