Luteibacter flocculans: IM816_03815
Help
Entry
IM816_03815 CDS
T08863
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lfl
Luteibacter flocculans
Pathway
lfl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lfl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IM816_03815 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfl03021
]
IM816_03815 (rpoC)
03400 DNA repair and recombination proteins [BR:
lfl03400
]
IM816_03815 (rpoC)
Enzymes [BR:
lfl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IM816_03815 (rpoC)
Transcription machinery [BR:
lfl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IM816_03815 (rpoC)
DNA repair and recombination proteins [BR:
lfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IM816_03815 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
URL59247
UniProt:
A0ABY4T564
LinkDB
All DBs
Position
881726..885937
Genome browser
AA seq
1403 aa
AA seq
DB search
MKDLLNLFNQQRQTLDFDAIKIALASPELIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAFVVIDPGLTALERGQLLSEDQYLEATEEHGDEFDARM
GAEAVYELLKSLDLPGEVIRLKEEISSTNSETKLKRLTKRVKLIEAFLESGNKPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFAKLQARGEATTIKAAKKLVEREEAQVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLEA
RALMMSSNNILSPANGEPIIVPSQDVVLGLYYMTRELINAKGAGMVFANVGEVRRAYDNR
AVELHAKVKVRVRSVETVDGERVERQSLVDTTVGRALLAEIIPEGLPFALVNTELTKKNI
SRLINQSYRLLGLKESVVFADKLMYTGFRFATRAGISIGIDDMKIPAEKRGILEEAEKEV
VEIQEQYQSGLVTAGERYNKVVDIWSRTNELVAKAMIDGIGTEKVTDADGNVVNQKSMNS
LYIMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVLQYFNSTHGARK
GLADTALKTANSGYLTRRLVDVAQDVVITEHDCGTEDGVLMSPIVEGGDVVEPLRERVLG
RVVVEDVYAPGDDDEPIVTRDTLLDEYLVDKLDKGGVQLIKVRSPITCRASHGVCALCYG
RDLARGHLVNMGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNVTVRTTGALKF
NNLKSVEHAQGHLVAVSRSGEVSVIDANGRERERYKVPYGATIAVKDGDPVKAGQTVANW
DPHTHPIVTEVAGVVRFIDFIDGVTVQSQTDELTGLESAVVTDPKRRGTQAKDLRPIVRL
EDSKGRELKLPGTDIAAQYFLPAGAIVSIQNGAEVGVGDVVARIPQETSKTRDITGGLPR
VADLFEARKPKEPAILAERSGIVSFGKDTKGKQRLIIKDADGNEHEELIPKWRQVIVFEG
EHVEKGETVVDGEPNPHDILRLLGVEPLASYLVKEIQDVYRLQGVKINDKHIEAIIRQML
RKVEITESGDSTYLRGEQVERVRINEENERAEARGERRAEFESVLLGITKASLATESFIS
AASFQETTRVLTEAAVRGTRDTLRGLKENVIVGRLIPAGTGLAYHASRRNQGGLTASELE
TLSGSAPAVTFEEAPAGSTDSAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgctcaatctgttcaaccagcagcgacagacgctggatttcgacgcgatc
aagatcgctctggcttcgccggagctgatccgttcgtggtcgtacggcgaagtgaagaag
ccggaaacgatcaactaccgcacgttcaagcctgagcgtgacggcctgttctgcgcagcc
attttcggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcat
cgcggcgtcgtctgcgagaagtgcggcaccgaggtcaccctggccaaggtccgtcgcgag
cgcatgggccatatcgaactggcgagcccgaccgcacatatctggttcctgaagtcgctg
ccctcgcgcatcggcctcatgctggacatgaccctgcgtgacatcgagcgcatcctgtac
ttcgaggccttcgtggtgatcgatccgggcctgaccgcgctcgagcgcggccagctgctc
agcgaagaccagtacctggaagccaccgaagagcacggtgacgagttcgacgcccgcatg
ggtgccgaggccgtctacgaactgctgaagagcctcgacctcccgggcgaagtcattcgc
ctgaaggaagagatctcgtcgacgaactccgagaccaagctcaagcgcctcaccaagcgc
gtgaagctgatcgaggcgttcctcgagtcgggcaacaagccggaatggatggtcctgacc
gtcctgccggtgctgccgcccgatctgcgcccgctcgtcccgctggacggcggccgcttc
gcgacctccgatctcaacgatctgtatcgccgcgtcatcaaccgcaacaaccgcctgaag
cgtctgctcgaactcgccgcgcccgacatcatcgtgcgcaacgagaagcgcatgctgcag
gagtcggtcgatgcgctgctcgacaacggccgtcgcggtcgtgccatcaccggtacgaac
aagcgcgcgctgaagtcgctcgcggacatgatcaagggcaagcagggtcgcttccgtcag
aacctgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggcccgacg
ctgcgcctgcaccagtgcggtctgccgaagaagatggcgctcgagctgttcaagcccttc
atcttcgcgaagctgcaggctcgtggcgaagccacgaccatcaaggctgccaaaaagctc
gtcgaacgcgaggaagcccaggtctgggacatcctggaagacgtgatccgcgaacatccg
gtcatgctcaaccgtgcgccgacgctgcatcgtctgggtatccaggcgttcgagccggtg
ctcatcgaaggcaaggcgatccagctgcatccgctcgtctgtacggcgttcaacgccgac
ttcgacggtgaccagatggccgtgcacgtgccgctgtcgatcgaggcgcagctcgaagcc
cgcgccctgatgatgtcgtcgaacaacatcctgtcgcccgcgaacggcgagccgatcatc
gtgccgtcgcaggacgtcgtgctcggtctgtactacatgacccgcgagctgatcaacgcg
aagggcgccggcatggtgttcgcgaacgtcggcgaagtgcgtcgtgcgtacgacaaccgc
gccgtcgaactgcacgccaaggtcaaggtgcgcgtgcgcagcgtggaaacggtggacggc
gagcgcgttgagcgccagtcgctcgtcgataccacggtgggtcgtgcgctgctggccgag
atcattccggaaggcctcccgttcgccctggtgaacacggagctgaccaagaagaacatc
tcgcgcctgatcaaccagagctaccgtttgctcggcctgaaggaatcggtcgtgttcgcc
gacaagctgatgtacaccggcttccgtttcgcgacgcgtgccggtatctccatcggcatc
gacgacatgaagatcccggccgagaagcgcggcatcctcgaggaagccgagaaggaagtc
gtcgagatccaggagcagtaccagtcgggtctcgtgaccgccggcgagcgttacaacaag
gtggtcgacatctggtcgcgcaccaacgagctcgtggccaaggcgatgatcgacggtatc
ggtaccgagaaggtcaccgatgccgacggcaacgtggtcaaccagaagtcgatgaactcg
ctgtacatcatggcggactccggcgcccgcggtagcgcggcccagattcgtcagctggcg
ggtatgcgcggcctgatggcgcgtccggacggctcgatcatcgagacgcccatcaaggcg
aacttccgcgaaggcctgaacgttctgcagtacttcaactccacccacggtgcccgtaag
ggtctcgcggatacggcgctgaagacggcgaactccggttacctgacccgtcgtctcgtc
gacgtggcgcaggacgtcgtcatcaccgagcacgattgcggcacggaagacggtgtgctg
atgtccccgatcgtggaaggcggcgacgtggtcgagccgctgcgcgagcgcgtgcttggc
cgtgtggtggtggaagacgtctacgcccctggcgacgacgacgaacccatcgtcacccgc
gacacgctgctcgacgagtacctggtcgacaagctcgacaagggtggcgtgcagttgatc
aaggtccgttcaccgatcacctgccgtgccagccatggcgtgtgcgccctgtgctacggc
cgcgaccttgctcgcggtcatctggtcaacatgggtgaggccgtgggtgtggtcgccgct
cagtcgatcggtgagccgggtacccagctgacgatgcgtacgttccacatcggtggtgcg
gcgtcccgtgcggctgcggtggacaacgtcacggtccgcacgaccggcgcgctgaagttc
aacaacctgaagtcggtcgagcacgcccagggtcacctggtcgcggtctcgcgttcgggc
gaagtgagcgtcatcgacgccaacggccgcgagcgcgagcgctacaaggtgccgtacggt
gcgacgattgcggtgaaggacggcgatccggtcaaggctggtcagaccgttgccaactgg
gatccgcatacccatccgatcgtcacggaagtggccggtgtggtccgcttcatcgacttc
atcgatggcgtgaccgtgcagtcgcagaccgacgaactgaccggcctcgagtcggcggtg
gtgaccgatccgaagcgtcgcggtacgcaggccaaggatctgcgcccgatcgtccgcctg
gaagacagcaagggccgcgagctcaagctgccgggtacggatatcgcggcacagtacttc
ctgccggccggcgcgatcgtctcgatccagaacggtgccgaagtgggcgtgggcgacgtg
gttgcccgtatcccgcaggaaacctcgaagacccgcgacatcacgggtggtctgccgcgc
gtggccgacttgttcgaagcccgcaagccgaaggagccggcgatcctcgcggaacgctcg
ggtatcgtcagcttcggcaaggacaccaagggcaagcagcgtctgatcatcaaggacgcg
gacggcaacgagcacgaagagctgattccgaagtggcgtcaggtcatcgtgttcgaaggc
gagcacgtggagaagggcgaaaccgtcgtggacggcgagccgaatccgcatgacatcctg
cgcctgctgggtgtcgagccgctggcctcgtacctggtcaaggaaatccaggacgtctat
cgcctgcagggtgtgaagatcaacgacaagcacatcgaagcgatcattcgccagatgctc
cgcaaggtcgagatcaccgagtcgggcgacagcacgtatctccgcggcgagcaggtcgag
cgcgtccggatcaacgaggagaacgagcgtgccgaggctcggggcgagcgtcgggccgag
ttcgagtcggtcctgctgggtatcaccaaggcgtcgctggctaccgagtcgttcatctcg
gcggcttcgttccaggagaccacccgcgtcctcaccgaggcggcggtccgtggcacccgc
gacacgttgcgtggccttaaggaaaatgttattgttggacggctaatccctgcgggcacg
ggtctggcttaccacgcttcgcgtcgtaaccagggcggcctgacggcctcggagctcgaa
accctctcgggttcggcgccggccgttacgttcgaagaggcacctgccgggtccaccgat
agcgccgagtaa
DBGET
integrated database retrieval system
