Luteibacter flocculans: IM816_06045
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Entry
IM816_06045 CDS
T08863
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lfl
Luteibacter flocculans
Pathway
lfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IM816_06045 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfl03019
]
IM816_06045 (rne)
03009 Ribosome biogenesis [BR:
lfl03009
]
IM816_06045 (rne)
Enzymes [BR:
lfl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IM816_06045 (rne)
Messenger RNA biogenesis [BR:
lfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IM816_06045 (rne)
Ribosome biogenesis [BR:
lfl03009
]
Prokaryotic type
rRNA processing factors
IM816_06045 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
URL59656
UniProt:
A0ABY4TAA8
LinkDB
All DBs
Position
complement(1368943..1372365)
Genome browser
AA seq
1140 aa
AA seq
DB search
MKRMLINATQREELRVAIVDGQNLYDLDIEIPSREQKKANIYKGRITRVEPSLEACFVDY
GAERHGFLPLKEVAREYFNPNAEGKSNIRELLKEGQEIIVQVEKEERGNKGAALTTFISL
AGRYMVLMPNNPRAGGVSRRIEGEDRQALKEAMEHLQVPDEMGLIVRTAGMGRDAEELQW
DLDYLLQLWKSISSAANSQKAPFLIYQESKLFIRALRDYLRNDIGEILIDEESLFNDARD
FVQQVMPNNLRKLKLYQDPTPLFSRYQIETQIESIFERNVRLPSGGSIVIDQTEALTAID
INSSKATKGSDIEETAFNTNLEAATEIARQLRIRDAGGLIVIDFIDMDSPRHQREVEERL
KEALKADRARVQIGRISRFGLLEMSRQRLRPSLGEATQIVCPRCEGHGHIRSVESLALST
LRLIEEHAMKENTGQVLVQAPPSVANFMLNEKRASIVEIELRHSVHVVVVADDKLETPHL
EITRIREADMGEHSKPSYERTTPAIATVLPKMGQALGSGEQPLVTGVVPSTPAPLRDDDN
ETVVAPAPARTAAPAPAAAPSSGGFFSRLFGSLFGGGTPAAPVAQPAAPTRRDENRQGGR
NDRNERNGRRDERRGNEGRGKGGEQRAPQGQRKDSTQQQARGQQPKGGNKQQGRGEQGQG
RQNDEKQQGRQKDPQAQGGRQPRQEQAAQGENRRQQQPRGERQPQGEKADKAVANTAAVA
AGAAPIVAPAPRAPSEKPATPAVKPEDATLAVTEASLADAEAMIAADASAAPGTDGAKDK
DTEGGQRRRRGRRGGRRRRRQEDGAAAGTMAEGSNAADDLDDEDGDDDASVDTGRDSPSV
PPMLDTAAAAENAFAVEAPVGVMATQPGEPADDEAVPSALTLPSLPKLPPIPGTSTSTTS
HAATAEATTPADSADSRTTERRQTESDAPLKSAPVSGSAPVPAATPTGVAHAEVTAPEAS
AAEPIVEAKHEPVVIAATTSAVAPAAAEAEQAPVEATTEVVSSLDTPARGLLPEATDSPS
SDDSAKAARQQAEPVVTPSTVTSPVSSSVAQTTASEALPASAPASSSAETSTATGEDADE
TAASATSAPKSTPASAPVTPKSPDASNVSAVSHVEAAKPASTPAQGDLLTRPRQEPHGEQ
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtatgttgatcaacgcgactcagcgcgaagagttgcgtgtggccatcgtcgat
ggccagaacctgtacgacctcgatatcgaaatcccgtcccgggaacagaagaaagccaac
atctacaagggccgcatcacccgcgtcgagccctccctcgaagcctgtttcgtcgactac
ggcgccgaacgccacggcttcctccccctgaaggaagtggcccgcgagtacttcaacccg
aacgcggaaggcaaatccaacatccgtgagctgttgaaggaaggccaggaaatcatcgtc
caggtcgagaaggaagaacgcggcaacaagggcgccgccctcaccacgttcatcagcctg
gccggccgctacatggtgctgatgccgaacaacccccgtgccggcggcgtctcgcgccgc
atcgagggcgaggatcggcaggcgctcaaggaagcgatggagcaccttcaggtgcccgac
gagatgggccttatcgtgcgtactgccggcatgggccgcgacgccgaggaactccagtgg
gatctcgattacctgctgcagctgtggaagtcgatttcctctgccgctaattcgcagaag
gcgcccttcctgatctatcaggagtcgaagctgttcatccgcgccctgcgtgattacctg
cgcaacgacatcggcgaaatcctgatcgacgaggagtcgctgttcaacgacgcccgcgat
ttcgtgcagcaggtgatgccgaacaacctgcgcaagctcaagctgtaccaggaccccacc
ccgctgttctcgcgctaccagatcgaaacgcagatcgagagcatcttcgagcggaacgtc
cgcctgccgtccggtggctcgatcgtcatcgaccagaccgaagcgctgaccgccatcgac
atcaactcgtcgaaggccaccaagggcagcgacatcgaggaaacggcgttcaacaccaac
ctcgaagcggcgacggaaatcgcccgccagctgcgcatccgcgacgccggcggcctgatc
gtcatcgatttcatcgacatggacagcccgcgccaccagcgcgaagtggaagagcgcctc
aaggaggcgctcaaggccgaccgtgcgcgcgtccagatcggccgcatctcccgcttcggc
ctgctcgaaatgtcgcgtcaacgcctgcgcccgagcctgggtgaggccacgcagatcgtg
tgcccgcgttgcgaaggtcacggccacatccgcagcgtggaatcgctggcgctgtcgacc
ctgcgcctgatcgaagagcacgcgatgaaggaaaacaccgggcaggtcctggtgcaggcg
ccgccttcggtcgccaacttcatgctcaacgaaaagcgcgccagcatcgtcgagatcgag
cttcgccacagcgtccacgtcgtggtcgtggccgacgacaaactggaaacgccgcacctg
gagatcacccgtatccgcgaagcggacatgggcgagcacagcaagcccagctatgagcgc
accaccccggccatcgccacggtgctgccgaagatgggccaggccctgggcagcggcgag
cagccgttggtgaccggcgtggttccgtccacgcccgcgccgctgcgcgacgacgacaac
gaaaccgtggttgccccggcaccggctcgcacggcggctcccgctccggcagcagctccg
tccagcggtggattcttctcccgcctgttcggcagcctgtttggcggcggcacgcctgcc
gcaccggtcgcccagcctgccgctccgacccgccgtgatgaaaaccgccagggtggtcgt
aacgaccgcaacgagcgcaatggtcgccgcgacgagcgtcgtggcaacgaaggccgcggc
aagggcggcgagcagcgcgcgccgcagggccagcgcaaggacagcacgcagcagcaggcc
cgcggccagcagccgaagggcggcaacaagcagcagggccgcggcgagcagggtcagggc
cgccagaacgacgaaaagcagcagggtcggcagaaggatccgcaggcacagggcggtcgc
cagccgcgccaggagcaggccgcgcagggtgagaaccgtcgccagcagcagccacgtggc
gagcgccagccgcagggcgagaaggccgacaaggccgtagcgaatacggccgccgtcgca
gccggcgccgcgccaatcgttgcaccggcaccccgcgccccgtccgagaagcctgccacc
cccgccgtgaagcccgaggacgccacgttggcagtcaccgaggcatcgttggccgatgcc
gaggccatgatcgctgcggacgcgagcgccgccccgggtacggacggcgcgaaggacaag
gacacggaaggcggccagcgtcgccgccgcggtcgtcgtggcggccgccgccgccgtcgc
caggaagacggtgccgcagctggcaccatggcggaaggtagcaacgctgccgacgatctg
gacgacgaagacggtgacgacgatgcatccgtcgacaccggccgcgacagcccgagcgtc
ccgccgatgctggacaccgccgccgctgccgagaacgccttcgcggtcgaggcgccggtc
ggcgtcatggcaacccagcccggcgagcctgccgacgacgaggccgtaccctcggcactg
acgctgccatccttgcccaagctcccgccgattcccggtaccagcacctccacgacgtcg
catgcggcgacagcggaagcaaccacgcccgcggattcggccgatagccgcaccacggaa
cgccgccagacggaatccgatgcgccgttgaagagcgcaccggtcagtggctcggcaccc
gtgccggccgcgacgccgaccggcgtcgcccacgcggaagtaacggcacccgaggcatcc
gccgccgaaccgatcgtcgaggcgaagcacgagcccgtcgtgatcgccgcgaccacgtcg
gcggttgcgccagcggcagccgaggctgaacaggcgcctgtggaggccacgacggaagtg
gtgtcctcgctcgacacgcccgcgcgcggtctgttgccggaagccaccgatagcccgagc
agcgacgatagtgccaaggcggcgcgtcagcaggccgagcctgtcgtcaccccgtcgacg
gtgacttcaccggtgagctcgtccgtagcgcagaccactgcgtccgaagccctcccggcg
tcggcccctgcgtcctcgtctgccgagacttcgacggcaacgggcgaggatgccgacgag
acggcggcatctgccacgtccgcacccaagtcgacgcctgcatcggcgccggtcacgccg
aagtcgccggacgcgtccaacgtctcggcggtctcgcacgtcgaggcggccaagccagca
tctacccccgcccagggcgacttgctcacccgccctcgccaagagccgcacggcgagcag
taa
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