Luteibacter flocculans: IM816_12230
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Entry
IM816_12230 CDS
T08863
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lfl
Luteibacter flocculans
Pathway
lfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IM816_12230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfl03019
]
IM816_12230
03009 Ribosome biogenesis [BR:
lfl03009
]
IM816_12230
Enzymes [BR:
lfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IM816_12230
Messenger RNA biogenesis [BR:
lfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IM816_12230
Ribosome biogenesis [BR:
lfl03009
]
Prokaryotic type
rRNA helicases
IM816_12230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
adh_short
UvrA_inter
AAA_30
CMS1
Motif
Other DBs
NCBI-ProteinID:
URL57402
UniProt:
A0ABY4T003
LinkDB
All DBs
Position
2836505..2838367
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AA seq
620 aa
AA seq
DB search
MSSPDTNNAPALPGFSALALDANVVRALTEVGYETPSPIQAATIPALLEGRDVIGQAQTG
TGKTAAFALPVLSRIDLRAGNKPQALVLAPTRELAIQVAEAFQKYATYLPGFQVLPIYGG
QSYGPQLQGLKRGAQVIVGTPGRVIDHLDKGTLDLSGLRFMVLDEADEMLRMGFIDDVEK
LLQATPEGRQVALFSATMPAPIRRIAQTYLKDPAEVTIKNKTTTAANIRQRYWWVSGVHK
LDALTRILEAESFDAMIVFARTKSATEELASKLQARGFAAAAINGDIAQAQRERVIDQLK
TGKLDILIATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGEAILFVTPR
ERNLLRQIERATRQPIEQMQLPTIEAVNDTRVNKFNERITETLATGDLGLFQQLVEKYEQ
EHNVPAIEIAAALARIAQGDQPLLLEPPAKREYTERPPREFDRERPQRDFDRERPSRDGG
DFNDRRPVREGMRQPRPHVTEAGKRTYRIEVGHEHGVKPGNIVGAIANEGGVEAKFIGRV
SIRDDYSLIDLPDGMPAETFNHLKKVWVAQQQLKIREWDGTESPQSGGGGSGGAPRPRGN
FRPSGGRPGGAKPPRKKRDA
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcccccgatacaaataacgctccggccctgcccggtttcagcgcgcttgccctc
gacgccaacgtcgtgcgcgcgctgaccgaggtcggctatgagaccccctcccccatccag
gccgccaccatcccggcgctgctcgaaggccgcgacgtgatcggccaggcgcagaccggt
accggcaagaccgcggctttcgcgctgccagtcctgtcgcggatcgatctgcgtgccggc
aacaagccccaggccctggtgctcgcgcccacgcgcgaactcgccatccaggtcgcggaa
gcgttccagaagtacgccacctacctgcccggcttccaggtgctgccgatctacggcggg
cagagctacggtccgcagttgcagggcctgaagcgcggtgcgcaggtcatcgtcggtacg
cccggccgtgtgatcgaccacctcgacaagggcacgctcgacctgtccgggctgcgcttc
atggtgctcgacgaggccgacgaaatgctgcgcatgggcttcatcgacgacgtcgagaag
ctgctgcaggcgacgccggaaggccgccaggtcgcgctgttctccgcaaccatgccggca
ccgatccgccgcatcgcgcagacctacctgaaagaccctgccgaagtcacgatcaagaac
aagaccaccacggcggcgaacatccgccagcgttactggtgggtcagcggcgtgcacaag
ctcgacgccctgacgcgcatcctcgaagccgagagcttcgacgccatgatcgtcttcgcg
cgcaccaagtcggccaccgaagaactcgccagcaagctgcaggcgcgcggtttcgcggca
gctgcgatcaacggcgacatcgctcaggcgcagcgcgagcgcgtcatcgaccagttgaag
acgggcaagctcgacatcctgatcgccacggacgtcgccgcgcgcggcctcgacgtggaa
cgcatcagccacgtgctcaactacgatatcccgcacgacaccgagtcgtacgtgcatcgc
atcggccgcaccggtcgcgcgggccgcagtggcgaggcgatcctcttcgtcacgccgcgc
gagcgcaacctgctacgtcagatcgagcgcgccacgcgtcagccgatcgagcagatgcag
ttgcccacgatcgaggcggtgaacgatacccgcgtcaacaagttcaacgagcgcatcacc
gaaacgctggcgacgggcgatctcggcctgttccagcaattggtggaaaagtacgagcag
gaacacaacgtaccggcgatcgaaatcgccgcggcactcgcgcgcatcgctcagggcgac
cagccgctgctgctggagccgccggccaagcgcgagtacaccgagcgcccgccgcgcgag
ttcgaccgtgaacgccctcagcgcgacttcgatcgcgagcgtccgtcgcgcgacggcggc
gacttcaacgatcgccgtcccgtgcgcgaaggcatgcgccagccgcgtcctcacgtcacc
gaggccggcaagcgcacctaccgcatcgaagtcggccacgagcacggcgtgaagccgggc
aacatcgtgggcgcgatcgccaatgaaggcggcgtggaagccaagttcatcggccgcgtc
agcatccgtgacgactatagcctgatcgacctccccgacggcatgcccgcggagaccttc
aaccacctgaagaaggtgtgggtcgcccagcagcagttgaagatccgcgaatgggacggc
accgagtcgccgcagagcggtggcggtggtagcggtggcgcgccgcgtccgcgcggcaac
ttccgcccgtcgggcggacgtccgggcggtgccaaaccgcctcgcaagaagcgcgacgcg
taa
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