Luteibacter flocculans: IM816_16970
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Entry
IM816_16970 CDS
T08863
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
lfl
Luteibacter flocculans
Pathway
lfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IM816_16970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfl03019
]
IM816_16970
Enzymes [BR:
lfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IM816_16970
Messenger RNA biogenesis [BR:
lfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IM816_16970
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RhlB
HEM4
Utp25_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
URL58262
LinkDB
All DBs
Position
complement(3909955..3911679)
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AA seq
574 aa
AA seq
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MSQTVLTDVFYENLDLHPLLHQGLAAAGITRCTPIQALTLPVALAGRDVAGQAQTGTGKT
FAFLVALMDRLLKHPAQPDRKDSDPRALVIAPTRELAIQIEKDFQAIGKATGLRSALIYG
GVDYDKQRQQLRDGCDIIIATPGRLLDYYKQDVFGFGSVEVMVIDEADRMFDLGFIKDVR
FIFRRLPAREKRQVLLFSATLSHRVLELAYEHMHEAEKLVVETDNITADRVRQVVYFPSK
EEKMPLLFNLLEESKAERSIIFVNTKAAAERITDRLKRHNFRVGAISGDVPQVKRQKLLQ
RFQEGQIDLLVATDVAARGLHIPAVSHVFNYDLPQDAEDYVHRIGRTARLGAEGDAISFA
CDLYAMGLPDIEAYINQKIPTASIEAKMLVMPAPRPRADGVQDEVDDPNDTGGHVPTRGA
PPEKGGRGGSRTGSRSGERSGGRERRPRPPREDRPAASPTEVPVKTVVVAETVADLPAAA
EAMADASAPKKRRRRRGGRGRGTGEGADASGNNGAPRAEKAATPRAADGQNGATRRPSRQ
VTATRPAPSPAPAAAPPKEKVGLLRRIGRLFGGR
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaaaccgttctcaccgacgtcttctacgaaaacctcgatctccacccgctgctt
caccaaggcctcgccgctgccggcatcacgcgctgcacgcccatccaggcgttgaccctt
ccggtggcgctggcggggcgcgacgtcgccggccaggcccagacgggcaccggcaagacc
ttcgccttcctcgtcgcgctgatggatcgcctgctcaagcacccggcccagcccgaccgc
aaggattccgatccccgtgccctggtcatcgcgcccacgcgcgagctggcgatccagatc
gagaaggacttccaggccatcggcaaggccaccggcctgcgcagcgcgctcatctacggc
ggcgtcgactacgacaagcagcgtcagcagcttcgcgatggctgcgacatcatcatcgcc
acgccgggccgcctgctcgactactacaagcaggacgtgttcggcttcggcagcgtcgag
gtcatggtcatcgacgaggcggaccgcatgttcgacctcggcttcatcaaggacgtccgc
ttcatcttccgtcgcctcccggcgcgcgagaagcggcaggtgctgctgttctccgccacc
ttgagccaccgcgtgctggagctggcttacgagcacatgcacgaagccgagaagctcgtg
gtggaaacggacaacatcaccgccgaccgcgtgcgccaggtcgtctacttcccgtcgaag
gaagaaaagatgccgctgctgttcaacctgctcgaagagagcaaggccgagcgcagcatc
atcttcgtcaacaccaaggccgccgccgagcggatcacggatcgcctgaagcgacacaac
ttccgcgtcggcgccatctccggcgacgtgccgcaggtgaagcgccagaagctgttgcag
cgcttccaggagggccagatcgacctcctggtggccaccgacgtcgctgcccgcggcctg
cacatcccggccgttagccacgtcttcaactacgacctgccgcaggatgcggaagactac
gtccaccgcatcggccgcaccgcgcgcctcggcgccgagggcgacgcgatcagcttcgcc
tgcgatctctacgccatgggccttccggacatcgaggcctacatcaaccagaagattccc
accgcgtcgatcgaggcgaagatgctggtgatgccggcgccgcggccccgcgccgatggc
gtgcaggacgaggtcgacgacccgaacgataccggcggtcacgtgccgacccgtggcgca
ccgcccgagaagggcggtcgtggcggttcgcgtaccggtagtcgttcgggcgagcgctcc
ggcggccgcgagcgccgtccgcgcccgccgcgcgaagatcgtccggctgcctcaccgacc
gaagtgccggtgaagacggtggtagtggccgagaccgtggccgacttgccggctgctgcg
gaagcgatggccgacgcctcggcgccgaagaagcgccgtcgccgtcgcggcggacggggc
cgcggtaccggcgagggcgcagacgcctccggcaacaacggcgccccgcgcgccgagaag
gccgccacgccacgcgccgcggacggccagaacggtgcgacgcgtcgcccgtcgcgccag
gtgaccgccacgcgtccggcaccttctcctgcgccggccgccgcaccgccgaaggagaag
gtcggtttgctgcgtcgtatcggtcgcttgttcggcggtcgatga
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