Luteibacter flocculans: IM816_17665
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Entry
IM816_17665 CDS
T08863
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
lfl
Luteibacter flocculans
Pathway
lfl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lfl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
IM816_17665 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lfl03021
]
IM816_17665 (rpoD)
Transcription machinery [BR:
lfl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IM816_17665 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF2764
Prefoldin_3
CCD97-like_C
Motif
Other DBs
NCBI-ProteinID:
URL58390
UniProt:
A0ABY4T2P2
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Position
4068761..4070620
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AA seq
619 aa
AA seq
DB search
MTNKAHEQQSEIKQLISKGLEQGYLTYAEINDHLPDDIVDPEQIEDIMAVLKGVGIEVHD
SAPDTDTISDGAAPGTSTDDESAAEEAVALLSAVDAEVGRTTDPVRMYMREMGTVELLTR
EGEIAIAKRIEEGLSQVQTALASFPLTIQLLLEEYDQHVEGKRRLSEILAGFADLEEAAD
AAQAEADAAVEVDGDAADEEEEVEAATEDEDTGPTGPDPEEVKRRMEELRSLHAKFQKAA
PKAEINDKKVAKIREQMSEAFLNLKLPSALIDSFVRKLREVVNDIRHHERVLMDIFVKQV
KMPRAEFLKSFPSNEGNLEWAAELSRKRQKWSPNIKNFREAIDAEQEKLAQIERTLYLPL
TDIKEINRAMSVGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA
VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQFG
REPTPEELAKEMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTNASSPIESA
TETGLMETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKAL
RKLRHPSRSETLRSFLDID
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgactaataaagctcacgagcaacagtctgaaatcaaacagctcatctccaagggtctg
gagcagggctacctgacctacgccgaaatcaacgaccacctgcccgacgacatcgtcgat
ccggagcagatcgaagacatcatggcggtgctcaagggcgtcggcatcgaagtccacgat
tccgcgccggacaccgacaccatctccgacggcgccgcccctggcaccagcaccgacgac
gagtccgcggccgaagaagccgtggccctgctctcggctgtggacgcggaggtgggccgc
accaccgaccccgtccgcatgtacatgcgcgagatgggcaccgtcgaactgctgacccgc
gagggcgaaatcgccatcgccaagcgcatcgaggaaggcctgagccaggtccagaccgcg
ctggccagcttcccgctcaccatccagttgctgctcgaggaatacgaccagcacgtggag
ggcaagcgccgcctgagcgagatcctcgccggcttcgcggatctcgaagaagctgccgac
gccgcccaggccgaagccgatgccgccgtggaagtggatggcgacgccgccgacgaagag
gaagaagtcgaggccgctaccgaggacgaggacaccggcccgaccggtcccgacccggaa
gaagtgaagcgccgcatggaagaactgcgctcgctgcacgccaagttccagaaggctgcg
cccaaggccgagatcaacgacaagaaagtcgcgaagattcgcgagcagatgtcggaagcc
ttcctcaacctcaagcttccgtcggcgctcatcgacagcttcgtgcgcaagctgcgcgag
gtggtgaacgacatccgtcaccacgagcgcgtgctcatggacatcttcgtcaagcaagtg
aagatgccgcgcgccgagttcctgaagagcttcccgtccaacgagggcaacctcgagtgg
gccgccgaactgtcgcgcaaacgtcagaagtggtcgccgaacatcaagaacttccgcgag
gccatcgacgcggagcaggaaaagctcgcccagatcgagcgcaccctgtacctgccgctg
accgacatcaaggaaatcaaccgcgccatgtccgtcggtgaggcgaaagctcgccgcgcc
aagaaggaaatggtcgaggccaacctgcgcctcgtgatctccatcgccaagaagtacacc
aaccgcggcctgcagttcctcgacctcatccaggaaggcaacatcggcctgatgaaggcg
gtggacaagttcgaataccgtcgcggctacaagttctcgacctacgctacttggtggatc
cgtcaggccatcacccgttcgatcgccgatcaggcgcgcaccatccgtatcccggtgcac
atgatcgaaacgatcaacaagttgaaccgcatctcccgccagatgctccagcagttcggc
cgcgagccgacgccggaagaactggcgaaggaaatggagatgccggaagacaagatccgc
aaggtcctgaagatcgcgaaggaaccgatctccatggaaaccccgatcggcgacgacgaa
gattcgcatctcggcgacttcatcgaagacaccaacgccagctcgcccatcgagtcggcg
acggaaacgggtctcatggaaaccgtgcgcgacgtgctggccggcctcaccccgcgtgaa
gccaaggtgctgcgcatgcgcttcggtatcgacatgaacacggatcacacgctggaagaa
gtcggcaagcagttcgacgtgacccgtgagcgcatccgtcagatcgaagccaaggcactg
cgcaagctgcgtcatccgagccgctcggaaacgctgcgctcgttcctcgacatcgactga
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