Companilactobacillus farciminis: LF20184_03825
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Entry
LF20184_03825 CDS
T06098
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
lfm
Companilactobacillus farciminis
Pathway
lfm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LF20184_03825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfm03400
]
LF20184_03825
DNA repair and recombination proteins [BR:
lfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LF20184_03825
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LF20184_03825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
RsgA_GTPase
AAA_29
nSTAND1
AAA_23
nSTAND3
AAA_21
AAA_22
AAA_15
AAA_25
AAA_14
SLFN-g3_helicase
nSTAND6
DnaJ_CXXCXGXG
Viral_helicase1
cobW
RNA_helicase
NACHT
MMR_HSR1
Septin
DUF87
Dynamin_N
Motif
Other DBs
NCBI-ProteinID:
ATO45938
LinkDB
All DBs
Position
821430..824279
Genome browser
AA seq
949 aa
AA seq
DB search
MLNDKIVIHGARAHNLKDIDVTIPRDKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLS
SYARQFLGQMDKPDVDSIDGLSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLWARVGTP
ICPNDGTKITSQSAQQMVDAILKLGDKTKLQILSPVVRSKRGQHKKALNQIKKQGYVRVQ
VDGETRDIAEDIELDKNKKHSIDVVVDRIVINDHIKSRLFDSVEAALRLSDGYMNVDVIG
SDMMVFSEKNACPLCGFTVGELEPRLFSFNAPFGACDNCDGLGVKLEVDLDLVIPDQSKT
LNEGAIIPWNPISSQYYPEMLAQACKEFKIDMDTPFEDLPEKDQNTILYGSDGKTFHFHY
ENDFGGVRDVDVEFEGVIPNINRRYRETNSDFTREVMRKYMTELTCPVCHGKRLNRQALA
VKIEGKDIAEVSDMSIKDELPFFKTVQFGEQNTVIAKPILKEVKDRLSFLINVGLEYLTL
SRSAGTLSGGEAQRIRLATQIGSNLSGVMYILDEPSIGLHQRDNDRLISSLKKMRDLGNT
LIVVEHDEDTMRAADYLIDVGPGAGENGGQIVAAGTPKEVEKNPKSLTGQYLAGKKFIPV
PLKRRDGNGEFVEVYGAAENNLKNLNVKFPLGKFTVVTGVSGSGKSTLVNMILKRALAQK
MNHNSEKPGKYKKITGYENLEKVIAIDQSPIGRTPRSNPATYTGVFDDIRGLFAQTNEAK
LRGYKKGRFSFNIKGGRCENCRGDGIIKIEMNFLPDVYVPCEVCHGTRYNSETLEVTYKG
KNIAQILDMKVSEALDFFSNIPKIKRKLQTIEDVGLGYVSLGQSATQLSGGEAQRMKLAS
ELYKKSNGKNFYILDEPTTGLHTDDIKRLLGVLQRLVDEGNTVLVIEHNLDVVKSADWLI
DLGPDGGEGGGKIVAQGTPEDITKVKASYTGQYLKPILERDTKRTKDAQ
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgttaaatgataaaattgtaatccatggtgcgcgtgcacataatttgaaggatatcgat
gtaacgattcctcgtgataaattagtcgttgtgactggtttgtctggttcagggaagagt
tcattagcctttgatactttgtatgctgaaggtcaaagacgttacgttgagagtctttca
tcttatgcacgacaatttttaggtcaaatggataagccggatgttgattcaattgatggt
ttgagtccagctatttcaattgaccaaaagactacttccaagaaccctcgttcaactgtt
gggactgttacagaaattaacgattaccttcgtttgttgtgggctcgagttgggacacca
atttgtcctaatgatgggaccaaaattactagtcaatcagctcaacagatggttgatgct
attttaaaattaggcgataaaactaaactgcaaattttatcaccggttgttcgttcaaaa
cgtggacaacataaaaaagccttgaatcaaattaagaaacaaggttacgttagagttcaa
gtagatggtgaaactcgtgatattgcagaagatattgaattagataagaacaaaaagcac
agtatcgatgttgtcgttgaccgtatcgtaatcaatgaccatatcaaatcacgtttgttt
gattcagttgaagctgctttgagactatctgatggctatatgaacgttgacgtaatcggt
tcagacatgatggtattttctgagaagaatgcttgtccgttgtgtggttttactgttggt
gaattagaacctcgtttgttttcattcaatgctccatttggtgcttgtgataactgtgat
ggtttaggagttaagctagaagtcgatttggatttagttattcctgaccaaagcaagact
ttgaacgagggagccattattccttggaatcctatcagttcacaatattatccagaaatg
ctagctcaagcatgtaaagaattcaaaattgatatggatacaccttttgaagatttgccc
gaaaaagatcaaaatactattttgtatggttctgatggcaagactttccacttccactat
gaaaatgatttcggtggcgtacgtgatgtcgacgtagaatttgaaggtgtcattcctaat
atcaatcgtcgttatcgtgagactaacagtgactttactcgtgaagttatgcgtaagtac
atgactgaattaacttgtccagtttgtcacggtaagagattgaatcgtcaagctttggct
gtcaaaatcgaaggcaaggatatcgctgaagtttctgatatgtcgatcaaggatgagctt
ccattctttaagacagtccaatttggtgaacaaaataccgttattgctaagccaatttta
aaggaagttaaagatcgtctcagtttcttgatcaatgttggcttggaatatttgacgctt
tctcgttcagctggaacattgtccggtggtgaagcacaaagaattcgtttagccacacaa
atcggttcaaacttgtctggtgtcatgtatattttggatgaaccttcgattgggttgcat
caacgtgataacgaccgtttgatcagttcattgaagaagatgcgtgatctcggtaacacc
ttgattgtcgttgaacacgatgaagatacgatgcgtgcagctgattacttgattgatgtc
ggtcccggtgccggtgaaaatggtggtcaaatcgtagctgctggtacgccaaaagaagtc
gagaagaatcctaagtctttgactggtcaatacttggcaggtaagaaatttattccagta
cctttgaaacgccgtgatggcaatggtgaatttgttgaagtctatggcgctgctgaaaat
aatttgaagaatttaaatgttaagtttccactaggtaaatttaccgttgtgacaggagtt
tctggttctggtaaatctactttggttaatatgatattgaagcgtgctttggctcagaag
atgaatcacaattccgaaaaacctggtaaatataagaaaataactggttatgaaaatctt
gaaaaagtgattgctatcgatcagagtccaatcggtcgaacacctagaagtaatccggcc
acttataccggcgtatttgatgatattcgtggtttgttcgcgcaaacgaatgaagctaag
ttgcgtggttataagaaaggcagattctctttcaatatcaaaggcggtcgctgtgagaat
tgtcgtggtgacggaattatcaagattgaaatgaatttcttgcctgatgtttatgtacct
tgcgaagtttgtcatggaactcgttacaattcagaaactctagaagtcacttataagggg
aagaacattgctcaaattttggatatgaaagtatccgaagctttggacttcttcagtaat
attcctaagatcaaacgtaagctccaaacaattgaagatgttggtttaggttatgtttca
ctaggtcaatcagctactcaattgtccggtggtgaagctcaaagaatgaaattggcttca
gagctttacaagaagtctaacgggaagaacttctacattttggatgaacctacaactggt
ttgcacacggatgatatcaagcgtctattaggagtattgcaacggttagtagatgaaggg
aataccgttttggttatcgaacacaatttggatgttgtgaagtcagctgactggttgatc
gaccttggtcctgatggtggtgaaggtggcggtaaaatcgttgcccaaggaacaccagag
gatattaccaaggtcaaagctagttatactggtcaatatcttaaaccaattttggaacgt
gatactaaacgtactaaagatgcacaataa
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