Companilactobacillus farciminis: LF20184_05625
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Entry
LF20184_05625 CDS
T06098
Symbol
polC
Name
(GenBank) PolC-type DNA polymerase III
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
lfm
Companilactobacillus farciminis
Pathway
lfm03030
DNA replication
lfm03430
Mismatch repair
lfm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LF20184_05625 (polC)
03430 Mismatch repair
LF20184_05625 (polC)
03440 Homologous recombination
LF20184_05625 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lfm03032
]
LF20184_05625 (polC)
03400 DNA repair and recombination proteins [BR:
lfm03400
]
LF20184_05625 (polC)
Enzymes [BR:
lfm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LF20184_05625 (polC)
DNA replication proteins [BR:
lfm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LF20184_05625 (polC)
DNA repair and recombination proteins [BR:
lfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LF20184_05625 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NI
DNA_pol3_a_NII
HHH_6
tRNA_anti-codon
DEDDh_C
DNA_pol_A_exo1
RNase_H_2
HHH_3
Zn-ribbon_8
YhfH
T2SSK
Motif
Other DBs
NCBI-ProteinID:
ATO46263
LinkDB
All DBs
Position
1151277..1155575
Genome browser
AA seq
1432 aa
AA seq
DB search
MADTKQLFEILVKQIKLDQLLESNDSFADGKLNKLEVHKNSKRWTFYFEFKDVLPFKEFL
TFVKALKASFEGIAQVNFEIKTTQAQLRQKDITDYWNYVLNDCSVESPMVLDKISQTPPH
MENGQVFLDVSNSFMADIVDGKLVNGLQSEYSSLGFPDFRIRANIDESKNQEKEAAMKAM
NVEKNKQFQAKAKEVSEKKAAKPVNVSKVGRKIPDDQEITQMVDIVEEERNKVVEGYVFD
IDVRKLKSGRSLLILKVTDYTSSFSIKKFSNGEDDENFFNSLDKGAWIRVRGSVQEDNFS
RELVIMANDINVIKHQPRIDTAEDDNKRIELHAHTNMSQMDAIPSATDLIKRASDWGQKG
IAITDHHALQAFPEAFSAGKKFGVKIAYGVEIDLVDEGNPIAYNLRDQKLAGSEYVIFDT
ETTGLSAVYDSIIEIGATKMKDGEVIDRFDKFINPGHPLSEVTTNLTSITTEMVENEPDE
SVIVGEFMDFIGDDILVGHNVTFDMGFMNAALTRMGRERLSMPVIDTLEMSRTLHSEYRN
HKLDSLAKRYNIVLEHHHRADSDAETTGYLMYKLFEELEDKFGTDNVDQLNDHIGGEEAY
KQARPSHAILLAKTQAGLKNMFKIVSYSMTQYYYRTARVPRRLLNKYREGIIVGSACENG
EVFTSMMQKGYDDTRELAQYYDYLEVMPKTLYQHLIDIKIIKDETALEEILKNIVKLGKE
LNKPVVATGDVHYLDPHDKVYRDIVIKAVKSNALARRPELPDVQFRTTNEMFDEFSYMDS
QTQQEIIVDNPKKIMDSIDEMSPVKDKLYTPKMEGAEDEIRNLTLNKAHELYGDPLPEIV
QERMDKELKSIIGNGFSVIYLISQRLVYKSNKDGYLVGSRGSVGSSFVATMTGITEVNPL
PPHYRCPKCKYSEFFTKGEVGSGYDLPDKKCPKCGADLKKDGQDIPFETFLGFKGDKVPD
IDLNFSGDYQPVAHNYTKVLFGEDHVFRAGTIGTIADRTAFGYVKNYEELTDQNLRNAEE
ERLAMGSTGVKRTTGQHPAGIIVVPDYMDIFDFTPIQYPADDQNAAWKTTHFDFHSIHDN
ILKLDILGHDDPTMIRMLQDLSGIDPKTLPVKDPGVMELFSGTKSLGVTPEQIFSKTGTL
GVPEFGTRFVRGMLEKTHPTTFAELLQISGLSHGTDVWLGNAEELIDKGIVTLKEVIGCR
DNIMMDLIHYGMDSQMAFQIMEHVRKGRGIPDDWKQAMKDADVPDWYIDSCLKIKYMFPR
AHATAYIIMALRIAYFKVHYPLYYYSAYFTVRADDFDLVAMTTGKDAVKASMKAINDKGM
DASTKEKNLLTVLELANECLERGFKIKMVDIEKSDAFEFKIIDDKTLLAPFNAIPGLGDN
VAKQIIAAREEQPFLSKQDLGTRGKVSKTVIEYMTENHVLDGMPDENQLSLF
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggcagatacaaaacaactttttgaaatactagttaagcaaattaaattggaccaattg
ttagaatctaacgattcgtttgccgatggtaaattgaacaaattggaagttcataagaat
agtaaacgttggaccttttactttgagttcaaggatgttttgccatttaaagaatttcta
acttttgtcaaagcgttgaaggctagttttgagggtattgcacaggtaaattttgaaatc
aagactacccaagcacaattaagacaaaaagatattaccgattattggaattacgtgttg
aatgactgttctgttgaatcgccaatggttttggataaaatcagtcaaacgccgccacat
atggaaaatggtcaagtctttttagatgtttcgaatagtttcatggcggatattgttgat
ggcaagttggtcaatggtttgcaatctgaatacagcagtttaggtttcccagattttcga
atcagagccaatatcgatgaatcgaagaatcaagaaaaagaagctgcgatgaaggccatg
aacgtggaaaagaacaagcaattccaagctaaggctaaagaagtcagtgagaaaaaggca
gctaaacccgtcaatgtttctaaagttggacgcaaaattcctgacgatcaagaaattacg
caaatggtcgatatcgtcgaagaagagagaaataaagttgttgaaggctatgtttttgat
atcgatgttagaaagttaaaatcaggtcgttcactattgattttaaaggtgactgattat
acgtcgtcatttagtatcaagaagttctcaaatggtgaagacgatgaaaatttcttcaat
tcattagataaaggcgcttggatcagagttcgtggtagcgttcaagaggataatttctcg
cgtgaattagttatcatggcaaatgatattaatgttatcaaacaccaaccaagaatcgat
actgcagaagatgacaataagcgtatcgaattgcatgcccacactaatatgagtcaaatg
gatgccattcctagtgcaactgatttgatcaaacgtgctagcgactggggtcaaaaggga
atcgccataactgatcaccatgctctacaagcctttcctgaagcttttagtgctggtaaa
aaattcggcgtcaaaattgcttatggtgtcgaaattgatttagtcgatgaaggtaatcca
attgcttacaatcttcgtgatcaaaaattagctggttcagaatatgtgattttcgatact
gaaacgactggtttgtcagctgtttacgattcgatcattgaaattggtgctactaagatg
aaagatggcgaagtaatcgatcgttttgataaatttatcaatcctggtcacccactgtca
gaagtaacgactaatttgactagtatcacaacggaaatggttgaaaatgaacccgatgaa
tcagtgattgtcggtgaattcatggactttattggcgatgatattttagttggtcacaat
gtaactttcgatatgggctttatgaatgccgctttgacgagaatgggacgagaacgcttg
tcaatgccagtgatcgatactttggaaatgtcacgaacattgcattcagaatatcgtaat
cacaagttggattcgttggctaaacgttacaatatcgttttggaacaccaccatagagcg
gattccgatgcggaaacaactggttatttgatgtacaagctgtttgaagaattggaagat
aaatttggaactgacaatgtcgatcaactaaatgatcatattggtggtgaagaagcatat
aagcaagctcgtccaagtcatgcaattttgttagctaagactcaagctggtttgaagaat
atgttcaaaatcgtttcgtattcaatgacacagtactattatcgaacagctcgtgtccct
aggagattgttgaacaagtatcgtgaaggtataatcgtaggttccgcctgtgaaaatggt
gaagtctttactagtatgatgcaaaaaggatatgacgatactagagaattggctcagtat
tacgattatttagaagtcatgccgaagactttgtatcaacatttgattgatatcaaaatt
atcaaagacgaaacagctctggaagagattttgaaaaatattgtcaaattaggtaaagaa
ctcaataagccagttgtcgcaacaggtgacgttcactacctagatccacatgacaaagtt
tatcgagatatcgttattaaagccgtcaagagtaatgctttagcacgtcgaccagagttg
ccagatgtacagtttagaacgactaatgagatgtttgatgaattcagttacatggactca
caaactcaacaagaaatcatcgttgataatcctaagaaaattatggattcaatcgatgaa
atgtctccggtcaaagataagctttatactcctaaaatggagggtgccgaagatgaaatt
cgtaatttgactttgaacaaagcacatgaactatatggtgacccattgccagaaatcgtt
caggagcgaatggacaaagagttaaagagtatcattggtaatggattctcagttatttac
ttgatttcacaacgtttggtttacaaatcaaataaagatggatatttggtaggttctcgt
ggttccgttggatcaagtttcgttgccacgatgactggtattactgaagttaatcctttg
ccaccgcattatcgctgtcctaagtgtaagtattccgaattctttactaaaggtgaagtt
ggttctggatatgatttgcctgataagaaatgtccaaaatgtggagctgatctcaaaaaa
gatggtcaagatattccgtttgaaactttcttaggatttaaaggtgataaggttccggat
attgatttgaacttctctggtgattatcagccagtagctcacaattatacgaaagtattg
tttggggaagatcacgtatttagagccggaacgattggtacaattgctgatcgaactgct
tttggttacgtgaaaaattacgaagaattgactgatcaaaatcttcgtaatgccgaagaa
gagcgattagccatgggttcaactggtgtcaaaagaaccactggtcaacatccggccgga
atcatcgttgtgcctgactacatggatatctttgatttcacgccaattcaatatccggct
gatgatcaaaatgctgcttggaagacgactcactttgatttccactcaattcacgataat
attttgaaactagatattctaggacatgatgatccaacgatgattcgtatgcttcaagat
ttatctggtatcgatcctaagactttgccggttaaagacccaggggtcatggaattgttc
agtggaactaagtctttaggtgttacgcctgaacaaatcttttcaaaaactggaacacta
ggggtgccagaattcggtactcgttttgttcgaggaatgcttgaaaagactcatccaaca
acctttgccgaattgctacaaatttctggattgtctcacgggactgatgtttggttaggt
aacgctgaagaattgatcgataaaggtatcgttactttgaaggaagttattggttgtcgt
gataatatcatgatggatttgattcactatggtatggattcacagatggctttccaaatc
atggagcacgttcgtaagggacgcggaattcctgatgattggaaacaagctatgaaagat
gctgatgttcctgattggtatattgattcttgtttgaagatcaaatacatgttccctcga
gctcacgccacagcttacattattatggcgttaagaattgcctactttaaggtacattat
ccactttactattacagtgcttacttcacagttcgtgctgacgactttgacttggtagcg
atgacgactggtaaagatgctgtcaaagcttcaatgaaagctatcaacgataagggaatg
gatgcttcaactaaagaaaagaatttgttgacagttttggaattggctaacgaatgcttg
gaacgtggtttcaagatcaagatggtcgatatcgaaaaatcagatgcttttgaatttaag
atcatcgatgataaaacacttctagcaccattcaatgctattcctggacttggtgacaac
gttgctaagcaaatcattgccgcacgtgaagaacaacctttcttatctaagcaagattta
ggtactcgtggtaaggtttcaaagactgttatcgaatatatgacagaaaatcatgtttta
gatggcatgccagacgaaaatcagttatcattattttag
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integrated database retrieval system
