Companilactobacillus farciminis: LF20184_06465
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Entry
LF20184_06465 CDS
T06098
Name
(GenBank) deoxyribonuclease IV
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
lfm
Companilactobacillus farciminis
Pathway
lfm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LF20184_06465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfm03400
]
LF20184_06465
Enzymes [BR:
lfm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
LF20184_06465
DNA repair and recombination proteins [BR:
lfm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
LF20184_06465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
ATO46421
LinkDB
All DBs
Position
1331098..1331994
Genome browser
AA seq
298 aa
AA seq
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MIIGSHVAMKAPKMLAGSAKEAHSYGANAMMIFTGAPQNTRRKDVSEMNIPEGQRLLEMY
GIKNIIGHAPYIINLGNTLKPDKLEFGIDFMRGEIKRCDALGIQALSFHPGAHLKQGPDV
ALKQIGQALNEIIDPDQKVSIAIETMAGKGTEVGISFEQIAQIFDNCAQNDKLSVTMDTC
HMSDAGYDVKNDFDGVLNEFDHIIGLDNLSVIHLNDSKNERGSHKDRHEDIGFGTIGFDA
LSYVAHHPQLENVSKIMETPYVKRDENDKKGIAPFKPEIEMLLANKFDPEMKEKLINA
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atgataattggttcacatgtggcaatgaaagcccctaaaatgttggctggttctgctaaa
gaagcccatagttatggcgctaatgcgatgatgatttttactggcgctcctcagaatact
cgaagaaaagatgtttcagagatgaatatacctgaaggtcaacgtctattagagatgtat
ggtatcaaaaatattattggtcatgcgccttatattattaatttaggaaataccttaaaa
cccgataaattagaatttggcatcgactttatgcgcggtgagatcaagcgttgcgatgcc
ttaggaattcaagcactaagttttcatccaggagctcacttaaagcaaggcccagatgtc
gccttaaaacaaattggtcaagccttaaatgaaatcattgatcctgatcaaaaggtttca
atagcaatcgagacgatggctggaaaaggaactgaagtagggataagtttcgaacaaatt
gcccagatttttgataattgtgctcaaaatgacaagttgtccgtcacaatggatacttgt
cacatgagtgatgctggttatgatgtcaagaatgatttcgatggtgtcttgaatgaattt
gaccacattattggtttggataacttatcagttattcatttaaatgattctaagaatgaa
cgcggttctcataaagaccgccatgaagacattggttttggtacgatcggttttgatgct
ctaagctatgtagctcatcatccacaattggaaaacgtctctaaaattatggaaacaccg
tacgttaaacgtgatgaaaatgacaaaaaggggattgctccatttaaacctgaaattgag
atgcttttggctaataaatttgatccagaaatgaaagaaaagctaattaatgcatag
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