Companilactobacillus farciminis: LF20184_06600
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Entry
LF20184_06600 CDS
T06098
Name
(GenBank) helicase-exonuclease AddAB subunit AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
lfm
Companilactobacillus farciminis
Brite
KEGG Orthology (KO) [BR:
lfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lfm03400
]
LF20184_06600
Enzymes [BR:
lfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LF20184_06600
DNA repair and recombination proteins [BR:
lfm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LF20184_06600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
Viral_helicase1
DEAD
AAA_12
ResIII
DUF2059
AAA_16
AAA_30
MrpR_N_CB
AAA_22
ParE_like
Selenoprotein_S
Motif
Other DBs
NCBI-ProteinID:
ATO46446
LinkDB
All DBs
Position
1360646..1364254
Genome browser
AA seq
1202 aa
AA seq
DB search
MPEWTEDQKKAIEHRGHDILVSAAAGSGKTTILIERILRELKSDEDVDNLLVATFTEAAA
QEMKDRLLKALKEAVNQTDNADEKRRLQKQIFRIPMANISTLHAFCLSVIKKFYYVIDLD
PNFRLLSDDTEKSIIQEQAYDNVRNKYYSKEDIDFIKLTNNFTNDKTDDGLKDIVFKLYD
FAITTSDTKAYLDDLSKTYQFVNSFSQTEFYREEFLPQIKSRLDELLLTVKHGLDLASDD
DLAQTYLDVFKEAEERLQKVNSELSQYNYDQLQDIFYNFKFKNKKQRVTKAEKEGKDLSL
MNETGEVKKTLDDQLKSLVTDYFLKSETGVNEALKVAQSLVQKLVEVEYSFINEFQKLKT
NSHVLDFNDLEHRAVDILEGEVDGRKIAQEYYQNKFHELMIDEYQDVNAMQDKIIDLLSC
ENNHRFMVGDIKQSIYGFRQAAPRLFTEKYEAFQRDDNDDELIQLSMNFRSSKAVDDFVN
NIFTKIFDKKIGDIDYDEKSKLITGTNFPEVVDTTNEFDVYVGDEDEEVTKRQTLISAAA
KKIQALIDQGFEIYDSKMKADSEEKKIRPLKYSDIAILSRVRDSNTDIISYFSKVNIPVM
VKDAQNYFQTTELQIMMSMLKLVDNPYEDIPLVAVLHSPIVGLNEEELAKIRLVDKRNIY
FTALNEYVASENAEEHLKNKISSFLVQLDNYRDFANKNSIARLIWKIYQETGILEYVSGM
PGGKQRAANLHALYQRANAYEENNYKGLHQFINFIERMQKLDKDLSQPNSIEANDDTVKV
MTVHGSKGLEFPIVIYLDMDKKFNMMDVNSDTVFDAQKGIGITVADNETRLKYRTIPRGI
ISYQKKIATVSEEMRLLYVALTRAKQKLIMLGFTKDSDKLLKTWNNVSMTNGLVNESIRM
KANSFQNFVGISTLQDAKAPEYYDEASHLQFKLIEAKTEDAKAPKNQKIKLLPKEPSQLF
KDAVADILDLDYQYQESVETTAYQSVSEIKGLFEDPDSKNMAEMLPEKSRYNLGSFAQPE
FLTKTKKVTNAEVGSATHLVLQKINIEKTPEIADFEELITQMTNEKLLTPELAKKIDCAS
LAKFYQSDLGQEIVANHQNVSREFPCSILMPAKRLFKDTAKDYSVNDKILVHGIIDGVIE
LDEGVIIFDYKTDHVTSQNEDELVKKYSGQVNLYAKAIEAIKKKPVLGKYLYFLKKDRAV
KL
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagtggacagaagatcagaaaaaagcaattgaacatcgcggacatgatatctta
gtttcagctgcggctggttcagggaagacaactatcttaattgaacgaatcttacgcgaa
ctgaagagcgatgaagatgttgataacttattagttgcaacttttacagaagctgccgct
caagaaatgaaggatcgtctattaaaagctttgaaagaagctgttaatcaaactgataat
gctgatgaaaaaagacgtcttcaaaaacaaatttttcgcattccgatggctaatatcagt
accttgcacgcattttgcttgagtgtgatcaagaagttttattatgtaattgatttagat
cctaattttcgacttttgagtgacgatactgagaaatcaattatccaagagcaagcttat
gataatgttcgtaacaagtactacagcaaagaagatatagacttcatcaaactaactaac
aatttcactaatgataaaactgacgatggtctaaaggacattgttttcaaactgtacgac
tttgccattacgactagcgatacgaaggcttatttagatgatttgagtaagacttatcaa
ttcgtaaattcatttagtcaaactgaattttatcgagaagaattcttgccacaaatcaag
tcacgcctagatgaacttctattgacagtcaaacacggtttagatttagcatctgacgat
gatttagcacaaacttacctagatgtctttaaggaagccgaagaaagactccaaaaagtc
aattcagaattgtcacagtacaattacgatcagttgcaggacatcttttataactttaaa
tttaaaaacaaaaagcaacgtgttactaaggctgaaaaagagggcaaagatctctcgtta
atgaatgaaaccggagaggttaagaaaactctagacgatcaattaaagagtctggtgact
gattacttcttgaagtcagaaactggtgtcaacgaagctttaaaggttgcccaaagttta
gttcaaaaattagttgaagttgaatatagctttattaatgagtttcaaaaacttaagact
aatagtcacgttttagacttcaatgatttagaacaccgcgccgttgatattttagaaggt
gaagtcgatggtcgaaagattgctcaagaatattatcaaaacaagttccatgagttaatg
atcgatgagtatcaagatgtcaatgccatgcaagataagattatcgacttattgtcgtgt
gaaaataatcatcgtttcatggtaggggacatcaagcagtcaatttacggctttagacaa
gcagcacctagattgtttaccgaaaaatatgaagccttccaaagagatgacaatgacgat
gaattgatccaattgtcaatgaatttccgttcctcaaaggccgtcgatgatttcgttaat
aatatctttacgaaaatttttgataaaaagattggtgacatcgattacgatgagaaatct
aagttgattaccggaactaacttcccagaggtcgttgatacaactaatgaatttgacgtt
tatgtcggcgatgaagatgaagaagtaactaagcgccagactttgatcagtgcagctgcc
aaaaaaattcaagctttgattgatcaaggctttgaaatttatgacagcaaaatgaaagcc
gactcagaagagaaaaagattcgtccattgaaatattcagatatcgctattttgtcgcga
gttagagatagcaatactgatattatttcttatttttcaaaggtaaatattcccgtcatg
gtcaaggatgcccaaaattatttccagacgactgaattgcaaattatgatgtcaatgttg
aagttggttgataatccatatgaagacatccctttggttgccgtcttacattcaccaatt
gttggattgaatgaagaagaattggccaaaatccgcttagtcgataaacgaaatatttac
tttacagctttgaatgaatatgtggcttctgaaaacgctgaagaacatctcaagaacaaa
atcagttcgtttttagtccaattggataattatcgtgactttgctaacaaaaatagcatt
gctcgtttaatttggaagatttatcaagagactggtattttggaatacgtttcagggatg
cctggtggaaagcaacgtgctgccaatcttcatgccttgtaccaacgtgccaatgcttat
gaagaaaataattataaaggtttgcatcaattcattaactttatcgaacgaatgcaaaaa
ttagacaaagatctttcgcaaccaaatagtattgaagctaatgatgatacggtcaaagtt
atgacagttcacggttctaagggattggaatttccaatcgtaatttatttggatatggac
aagaagttcaatatgatggatgtcaattccgacactgtctttgacgctcaaaaaggaatc
ggaattactgtggctgataatgaaactagactcaagtatcggaccatccctcgaggaatt
atcagttatcaaaagaaaatcgctactgtttccgaagaaatgcgtttattgtacgtagcg
ttaactagagcaaagcaaaaattgatcatgcttggttttactaaagattcagataaacta
ttaaaaacttggaataatgtttcgatgactaatggtttagtgaatgaatcaattagaatg
aaagctaatagttttcaaaacttcgttggtatcagtacattacaagatgctaaggcacca
gagtattatgatgaagcgagtcatttgcaatttaaactgatagaagccaaaactgaagat
gcaaaagctcctaagaatcaaaaaatcaaattgttacctaaagaacctagtcaattgttc
aaagatgcagttgccgatattttggatttagattatcaatatcaagaatcagttgaaacg
acggcctatcagtcagtttctgaaatcaaaggtttgtttgaagaccctgatagcaaaaac
atggctgaaatgctaccggaaaagtcacgctataacttaggctcatttgctcaaccggaa
tttttgactaagactaaaaaagtcactaacgctgaagtcggaagtgcaactcacttagtt
cttcaaaaaatcaatatagagaagactccagaaattgccgattttgaagaattaataact
caaatgaccaatgaaaaattattgacgccagaattggctaaaaaaatcgactgtgctagt
ttggccaaattttatcaaagcgacttaggtcaagaaattgttgctaatcatcaaaatgtt
agtcgagaattcccttgctcaattctgatgccagccaaaagattgtttaaagataccgca
aaagattattctgttaacgataaaatcttagttcatggtattattgatggagtgattgaa
ttagatgaaggcgtaattatttttgactataaaactgatcatgttactagtcaaaatgag
gatgaacttgttaagaaatattcaggacaagttaatttatacgcaaaagcgattgaagca
atcaagaaaaagcccgttttgggcaaatatctttatttcttgaagaaagaccgagcagtt
aaactttaa
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