KEGG   Companilactobacillus farciminis: LF20184_06720
Entry
LF20184_06720     CDS       T06098                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
lfm  Companilactobacillus farciminis
Pathway
lfm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lfm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    LF20184_06720
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lfm03400]
    LF20184_06720
DNA repair and recombination proteins [BR:lfm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LF20184_06720
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      LF20184_06720
SSDB
Motif
Pfam: ABC_tran SMC_N UvrA_DNA-bind AAA_21 nSTAND1 AAA_29 DnaJ_CXXCXGXG RsgA_GTPase AAA_23 AAA_15 nSTAND3 AAA_16 PRK DUF463 cobW AAA_25 DUF2024 YobI-ATPase RNA12 Cytidylate_kin zf-C2H2_3
Other DBs
NCBI-ProteinID: ATO46467
LinkDB
Position
1389475..1391982
AA seq 835 aa
MDKKIEVRGGKVNNLKNINVDIPLNKFVAISGPSGSGKSSLAMGILYAEGSRRYLEALST
YTRRRISQSKRSDVQEVKHIPSAIALRQRPGVPSERSTVGSMSEIFNVVRLIFSRLGSTI
CPNGHRIEPSLKIAQAMDLPGDRMGVITCPVCGVEFMAKAAEDFAFNSGGACVQCHGTGK
IRELDERKLIGDESLSLDQGVVASWHLPGRNFMPTVAATLGVRTDVPYKDLTDKEKNIVL
HGEKKQYSVDFRTSTGRVFHTDKTLYENAYEAVYDSLKTVKSERSINKINQFFHFSTCPT
CHGTRLNPELLTQIVGKKNIAEVSDLTLGNLNEWETQTKSELPQELQAMARVLFKNLHDT
LQPLLDLGLDYLTLSRNGNTLSTGELQRIQLAKTLRTETTGVLYVLDEPSIGLHPDNVKG
LINIFHKLIDQGNSLVVVDHEVDIISAADWVIEIGPGSGDAGGNVIAQGTPQELIHDENS
LIGPFISGKADIMHEKVSSKKNATDLSTNFEVKDYFNLHDISASIPGNKITAITGFSGAG
KTSLILDSLVPAIEDKKNKQALPKQVVKLDTKLTNVVSIDAKPVGKNTRSSLATYTTIMD
NLRRMFADLPESKARKYTISNFSYNNKQGACEHCGGIGKISLDIQYLPDMVEVCPYCHGN
RFKDEIQQIHWHGYSIVDLLNLSVKDALKVFESVPKIEKQLKLLDEIGLNYLHLGESTPE
LSGGEAQRLKLVNHLTGKQDKTMFVFDEPSVGLHPIDVQTLLGVMNKLKSQGATIIIITH
DLDLMTNADYLIDLGPKGGAAGGKLMAAGKPSELVKNASSLTIDYLKEHFQKFNL
NT seq 2508 nt   +upstreamnt  +downstreamnt
atggataaaaaaattgaggttcgaggaggaaaggtcaacaatttgaaaaatatcaatgtt
gacatccctttgaataaatttgtagctatttctggaccatctggatcggggaaaagctcg
ttagccatgggtatcttgtatgctgagggttcgagaagatacttggaagctttatcgacc
tatacgagaagacgaatcagtcaaagcaagcgttcagacgttcaagaagttaagcacatt
ccatctgccattgctctacgtcaacgtccaggagttccttccgaaagatcgaccgttggt
tcgatgagtgagatttttaatgtcgtcagattgattttttcacgtttaggatcaacgatt
tgtccaaatggtcatcgaatagaaccaagtcttaaaatagctcaagcaatggatttgcca
ggagaccgtatgggagtaatcacttgtcccgtctgtggtgtcgaattcatggctaaggca
gctgaagattttgcctttaactctggtggtgcctgtgttcaatgtcacggtactggtaaa
attcgtgaattggatgaaagaaagttgattggtgatgagtcgttaagccttgatcaagga
gtggttgcttcttggcatcttcccggcagaaatttcatgccaacagttgcagcaacttta
ggtgtaagaaccgatgttccatataaggatttgaccgataaagaaaaaaatatcgtttta
catggtgaaaagaaacaatattcagttgattttagaacttctaccggtcgtgtttttcac
actgataaaacactatatgaaaatgcttatgaagcagtttacgactccttaaagacagtt
aaaagtgaacgttctattaacaaaattaaccaattctttcatttttcgacttgtccaact
tgtcacggaacacgtctgaatcccgaattgttgacacaaatcgtgggtaagaagaatatt
gcggaagtttctgatttgactcttggtaatctcaatgaatgggaaacacagacaaaatca
gaactacctcaagaattacaagctatggctagagtactttttaaaaacttgcatgacacc
ttacagccactgctcgatttgggattagattatttaaccttatcgagaaatggtaatact
ttgtcgacgggtgaattacaacgaattcaattagcaaagacattgagaacagaaacgacc
ggagtactttacgtcttggatgaaccttcgattggactgcatcctgataacgttaaaggt
ctgatcaatatttttcataaattgattgatcaaggaaattctttagtagtcgttgatcat
gaagtcgatatcatcagtgctgctgactgggtgattgaaattggtcctggttctggggat
gcaggtggaaacgttatcgctcaaggtactcctcaagagttaattcatgatgagaattca
ttaattggtccatttatctctggaaaagctgatatcatgcatgaaaaagtttcttcaaag
aaaaatgcgacagatttatcaactaattttgaagttaaagactatttcaatttgcacgat
atctcagcttcaataccgggaaataaaataaccgctattactgggttttctggagctgga
aagactagtttgattttagatagtttagtaccggctatcgaagacaagaaaaataagcaa
gcattacccaaacaagttgtcaaactagataccaaattaactaatgtcgtcagtatcgat
gccaaacccgttggtaaaaatactagatcaagtttagcgacttatacgacaatcatggat
aatttgagacgaatgtttgctgatttacctgaatctaaagccagaaaatatactatttca
aatttttcctacaataataaacaaggtgcttgtgaacactgtggtggtattggaaaaatt
tcactagatattcaatatcttcccgatatggtagaagtttgcccatattgtcatggcaat
cgttttaaagatgagattcaacaaattcactggcacggttactctattgtcgatttactc
aatttatcagttaaagatgcattaaaggtttttgaatccgttccaaaaattgagaaacaa
ttaaagttattggacgaaatcggactaaattacttgcatctcggcgaaagcactccagaa
ttatcaggtggggaagctcaacgtttgaaattagttaatcatttgactggcaagcaggat
aaaacgatgtttgtctttgatgaaccatcagttggtttacatcctatcgatgtccaaacg
ttactcggtgtcatgaataaattaaaatctcaaggtgcaacgatcattatcattactcac
gatttagatttgatgactaatgccgattacttaattgatctaggtccaaagggtggtgct
gctggtggtaaattaatggccgctggtaagccaagtgagctagtcaaaaatgcatcaagt
ttaacaattgattatttaaaagaacattttcaaaagtttaatttatag

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