Companilactobacillus farciminis: LF20184_06810
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Entry
LF20184_06810 CDS
T06098
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
lfm
Companilactobacillus farciminis
Pathway
lfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LF20184_06810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lfm03019
]
LF20184_06810
03400 DNA repair and recombination proteins [BR:
lfm03400
]
LF20184_06810
Enzymes [BR:
lfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LF20184_06810
Messenger RNA biogenesis [BR:
lfm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LF20184_06810
DNA repair and recombination proteins [BR:
lfm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LF20184_06810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ATO46482
LinkDB
All DBs
Position
complement(1411661..1413466)
Genome browser
AA seq
601 aa
AA seq
DB search
MKLEAILKEEFGYDTFRPGQKELIEMVLDGKKTMGIMPTGGGKSICYQLPATIMSGLTLV
VSPLISLMKDQVDSLNEDGIPATFLNSTVEWHDREERMRYIESGAVKLLFVAPEKIVDEE
FYSWLSSLDISLIAIDEAHVLSSWGHDFRSSYLEMIQPLKALSTDCAWLALTATATEEVQ
ADLARILDVPDENIVKTGFDRDNLALKIERGVDKTDYVLNYVKSHENESGIIYAGRREDV
DKIYNFLKENDVSVGRYHAGLSDIERHNQQEDFLFDRINVIVATNAFGMGINKTNVRYVL
HFTVPGTIENYYQEVGRAGRDGLPAEAILLYTPADLRLHQFFINKSLGDDQYKLSLRKKL
FEMSRYAETQTCLMKFILDYFGETDTQVCGRCSNCLDDREVVDVTADAQKALSCVVRMGQ
NFGKKMITRVLVGKDDVANDWHHFEKLSTFGIFEDRTLKETSRFIEFLAANGYLTGSGGK
YPTLKLSKKGADVLKGKINVAKRQDLPKYKPENVTKSRTIVADGSFDMNLFEKLRALRTK
WARKQALPPFMIFSDKTLKDMCVKNPITEADFLNVSGVGKVKLEQYGESFLNEIKEYQAE
A
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
ttgaaattagaagctatcttaaaagaagaattcggttatgatacgtttcggcccggtcaa
aaagaactgatcgaaatggttttggatggtaaaaaaaccatgggtatcatgccaaccggt
ggtggtaaatcaatttgctatcaattgccagccacaattatgtcaggattgactttagtc
gtctcaccattgatttctttaatgaaagatcaagtagatagtttgaatgaggatggtatt
ccggctacttttttgaacagtaccgttgaatggcacgaccgtgaagaaagaatgcgctat
atcgaaagcggtgcagttaaactgttatttgtcgctccagaaaagattgttgacgaagag
ttttacagttggctatcaagtctagatatttcattgattgcaattgatgaagcgcacgtt
ttgtcgtcttggggacatgatttccggagtagttatttggaaatgatccaaccattgaaa
gctttgtccacggattgtgcttggctagctttgacggcgaccgctacagaagaagttcaa
gccgatttggctagaattttggatgttcctgatgaaaatatcgttaagactggctttgat
cgtgataatttggctttaaagattgaacggggcgtagataaaactgattatgttttgaat
tacgtcaagtctcatgaaaatgaatccggcattatttatgcaggtcggcgtgaagatgtt
gataaaatctacaattttttgaaagaaaatgacgtttcagttggacgttatcatgctggc
ttaagcgacatagaacgccacaatcaacaagaagattttttgtttgaccgtattaacgtg
atcgtagcgacaaatgcctttggaatgggtatcaataagactaatgtgcgctatgtgctg
cattttaccgtacctgggacaattgagaattactatcaagaagttggtcgtgcgggacgt
gatggcctgccagctgaagcgattttgctgtatacgccagctgacttacgattgcatcaa
tttttcatcaataagtccttaggcgatgaccaatacaaattgagtttgcgtaagaagtta
tttgaaatgagtcgttacgctgaaacgcagacttgtctgatgaaattcatcttagattac
tttggagagaccgatacgcaagtctgtggtcgttgctccaattgtttggatgaccgcgaa
gtagtcgatgtaaccgctgatgctcagaaagctttgagttgtgtcgttagaatggggcaa
aacttcggtaagaagatgattactagagttttagtcggcaaagatgacgtagctaacgac
tggcatcattttgaaaaattgtcaacctttggtatttttgaagatagaactttaaaagaa
acgagccgttttattgaatttttggcagctaatggctatttgactggatcaggaggtaag
tatccaactctgaaattgtcaaaaaagggtgccgatgtcctaaagggaaaaatcaacgtt
gctaagcgtcaagatcttccgaaatacaagccggaaaacgttactaagagtaggaccatt
gtcgctgatggcagttttgatatgaatctattcgagaaattacgtgctttacgaacaaag
tgggcgagaaaacaagctttgccaccatttatgattttttcagataagaccctaaaggat
atgtgcgtcaagaatccaataacggaagccgactttctcaacgtcagtggagtggggaaa
gtgaaactagagcagtatggtgaaagcttcttaaatgaaataaaagagtatcaagctgaa
gcgtag
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